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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Vitis vinifera"

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Vitis vinifera (34)
	Arabidopsis thaliana (1)

Taxonomy

Eukaryota (34)

Experimental Method

X-RAY DIFFRACTION (34)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (3)
	1.5 - 2.0 (13)
	2.0 - 2.5 (12)
	2.5 - 3.0 (2)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (11)
	2010 - 2014 (11)
	2015 - 2019 (7)
	2020 - 2024 (5)

Enzyme Classification Name

	Oxidoreductases (15)
	Transferases (4)
	Lyases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (10)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	All beta proteins (4)
	All alpha proteins (1)

AllSelected

1 to 25 of 34 Structures

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2C1X \| pdb_00002c1x	Download File View File

Structure and activity of a flavonoid 3-O glucosyltransferase reveals the basis for plant natural product modification

Offen, W., Martinez-Fleites, C., Kiat-Lim, E., Yang, M., Davis, B.G., Tarling, C.A., Ford, C.M., Bowles, D.J., Davies, G.J.

(2006) EMBO J 25: 1396

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vitis vinifera
Macromolecule	UDP-GLUCOSE FLAVONOID 3-O GLYCOSYLTRANSFERASE (protein)
Unique Ligands	B3P, UDP

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2C1Z \| pdb_00002c1z	Download File View File

Structure and activity of a flavonoid 3-O glucosyltransferase reveals the basis for plant natural product modification

Offen, W., Martinez-Fleites, C., Kiat-Lim, E., Yang, M., Davis, B.G., Tarling, C.A., Ford, C.M., Bowles, D.J., Davies, G.J.

(2006) EMBO J 25: 1396

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vitis vinifera
Macromolecule	UDP-GLUCOSE FLAVONOID 3-O GLYCOSYLTRANSFERASE (protein)
Unique Ligands	KMP, U2F

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2C29 \| pdb_00002c29	Download File View File

Structure of dihydroflavonol reductase from Vitis vinifera at 1.8 A.

Petit, P., Granier, T., D'Estaintot, B.L., Hamdi, S., Gallois, B.

(2007) J Mol Biology 368: 1345

Released	2006-10-16
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Vitis vinifera
Macromolecule	DIHYDROFLAVONOL 4-REDUCTASE (protein)
Unique Ligands	DQH, NAP

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2C9Z \| pdb_00002c9z	Download File View File

Structure and activity of a flavonoid 3-0 glucosyltransferase reveals the basis for plant natural product modification

Offen, W., Martinez-Fleites, C., Kiat-Lim, E., Yang, M., Davis, B.G., Tarling, C.A., Ford, C.M., Bowles, D.J., Davies, G.J.

(2006) EMBO J 25: 1396

Released	2006-01-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vitis vinifera
Macromolecule	UDP GLUCOSE\:FLAVONOID 3-O-GLUCOSYLTRANSFERASE (protein)
Unique Ligands	QUE, UDP

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2IOD \| pdb_00002iod	Download File View File

Binding of two substrate analogue molecules to dihydroflavonol-4-reductase alters the functional geometry of the catalytic site

Petit, P., Langlois d'Estaintot, B., Granier, T., Gallois, B.

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Vitis vinifera
Macromolecule	Dihydroflavonol 4-reductase (protein)
Unique Ligands	MYC, NAP

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2NNL \| pdb_00002nnl	Download File View File

Binding of two substrate analogue molecules to dihydroflavonol-4-reductase alters the functional geometry of the catalytic site

Petit, P., Langlois D'Estaintot, B., Granier, T., Gallois, B.

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vitis vinifera
Macromolecule	Dihydroflavonol 4-reductase (protein)
Unique Ligands	ERD, NAP

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2P3X \| pdb_00002p3x	Download File View File

Crystal structure of Grenache (Vitis vinifera) Polyphenol Oxidase

Reyes Grajeda, J.P., Virador, V.M., Blanco-Labra, A., Mendiola-Olaya, E., Smith, G.M., Moreno, A., Whitaker, J.R.

(2010) J Agric Food Chem 58: 1189-1201

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vitis vinifera
Macromolecule	Polyphenol oxidase, chloroplast (protein)
Unique Ligands	C2O

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2RH8 \| pdb_00002rh8	Download File View File

Structure of apo anthocyanidin reductase from vitis vinifera

Gargouri, M., Mauge, C., Langlois D'Estaintot, B., Granier, T., Manigan, C., Gallois, B.

(2009) Acta Crystallogr D Biol Crystallogr 65: 989-1000

Released	2008-11-18
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Vitis vinifera
Macromolecule	Anthocyanidin reductase (protein)
Unique Ligands	CL

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3BXX \| pdb_00003bxx	Download File View File

Binding of two substrate analogue molecules to dihydroflavonol 4-reductase alters the functional geometry of the catalytic site

Trabelsi, N., Petit, P., Granier, T., Langlois d'Estaintot, B., Delrot, S., Gallois, B.

(2008) Acta Crystallogr D Biol Crystallogr D64: 883-891

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Vitis vinifera
Macromolecule	dihydroflavonol 4-reductase (protein)
Unique Ligands	NAP, QUE

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3C1T \| pdb_00003c1t	Download File View File

Binding of two substrate analogue molecules to dihydroflavonol 4-reductase alters the functional geometry of the catalytic site

Trabelsi, N., Petit, P., Granier, T., Langlois d'Estaintot, B., Delrot, S., Gallois, B.

(2008) Acta Crystallogr D Biol Crystallogr D64: 883-891

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.252 Å
Organisms	Vitis vinifera
Macromolecule	dihydroflavonol 4-reductase (protein)
Unique Ligands	MYC, NAP

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3HFS \| pdb_00003hfs	Download File View File

Structure of apo anthocyanidin reductase from vitis vinifera

Gargouri, M., Mauge, C., Langlois d'Estaintot, B., Granier, T., Manigan, C., Gallois, B.

(2009) Acta Crystallogr D Biol Crystallogr 65: 989-1000

Released	2009-09-01
Method	X-RAY DIFFRACTION 3.17 Å
Organisms	Vitis vinifera
Macromolecule	Anthocyanidin reductase (protein)
Unique Ligands	CL

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3I52 \| pdb_00003i52	Download File View File

Ternary complex structure of leucoanthocyanidin reductase from vitis vinifera

Mauge, C., Gargouri, M., d'Estaintot, B.L., Granier, T., Gallois, B.

(2010) J Mol Biology 397: 1079-1091

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Vitis vinifera
Macromolecule	Putative leucoanthocyanidin reductase 1 (protein)
Unique Ligands	KXN, NAP

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3I5M \| pdb_00003i5m	Download File View File

Structure of the apo form of leucoanthocyanidin reductase from vitis vinifera

Mauge, C., Gargouri, M., d'Estaintot, B.L., Granier, T., Gallois, B.

(2010) J Mol Biology 397: 1079-1091

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Vitis vinifera
Macromolecule	Putative leucoanthocyanidin reductase 1 (protein)

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3I6I \| pdb_00003i6i	Download File View File

Structure of the binary complex leucoanthocyanidin reductase - NADPH from vitis vinifera

Mauge, C., Gargouri, M., d'Estaintot, B.L., Granier, T., Gallois, B.

(2010) J Mol Biology 397: 1079-1091

Released	2010-02-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Vitis vinifera
Macromolecule	Putative leucoanthocyanidin reductase 1 (protein)
Unique Ligands	ACY, NDP

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3I6Q \| pdb_00003i6q	Download File View File

Structure of the binary complex leucoanthocyanidin reductase-NADPH from vitis vinifera

Mauge, C., Gargouri, M., d'Estaintot, B.L., Granier, T., Gallois, B.

(2010) J Mol Biology 397: 1079-1091

Released	2010-02-23
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Vitis vinifera
Macromolecule	Putative leucoanthocyanidin reductase 1 (protein)
Unique Ligands	NDP

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3TSY \| pdb_00003tsy	Download File View File

4-Coumaroyl-CoA Ligase::Stilbene Synthase fusion protein

Yi, H., Jez, J.M.

(2011) J Am Chem Soc 133: 20684-20687

Released	2011-12-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Arabidopsis thaliana Vitis vinifera
Macromolecule	Fusion Protein 4-coumarate--CoA ligase 1, Resveratrol synthase (protein)

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3TUU \| pdb_00003tuu	Download File View File

Structure of dihydrodipicolinate synthase from the common grapevine

Perugini, M.A., Dobson, R.C., Atkinson, S.C.

(2012) PLoS One 7: e38318-e38318

Released	2012-07-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vitis vinifera
Macromolecule	dihydrodipicolinate synthase (protein)
Unique Ligands	BR, CL

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4B2G \| pdb_00004b2g	Download File View File

Crystal Structure of an Indole-3-Acetic Acid Amido Synthase from Vitis vinifera Involved in Auxin Homeostasis

Peat, T.S., Bottcher, C., Newman, J., Lucent, D., Cowieson, N., Davies, C.

(2012) Plant Cell 24: 4525

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vitis vinifera
Macromolecule	GH3-1 AUXIN CONJUGATING ENZYME (protein)
Unique Ligands	MLI, V1N

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4HNN \| pdb_00004hnn	Download File View File

Dihydrodipicolinate Synthase from the common grapevine with pyruvate and lysine

Atkinson, S.C., Dobson, R.C.J., Perugini, M.A.

(2013) Plant Mol Biol 81: 431-446

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vitis vinifera
Macromolecule	Dihydrodipicolinate synthase (protein)
Unique Ligands	LYS

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4JRU \| pdb_00004jru	Download File View File

Structure of haze forming proteins in white wines: Vitis vinifera thaumatin-like proteins

Marangon, M., Menz, R.I., Waters, E.J., Van Sluyter, S.C.

(2014) PLoS One 9: e113757-e113757

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Vitis vinifera
Macromolecule	thaumatin-like protein (protein)
Unique Ligands	GOL

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4L5H \| pdb_00004l5h	Download File View File

Structure of haze forming proteins in white wines: Vitis vinifera thaumatin-like proteins

Marangon, M., Menz, R.I., Waters, E.J., Van Sluyter, S.C.

(2014) PLoS One 9: e113757-e113757

Released	2013-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vitis vinifera
Macromolecule	VVTL1 (protein)
Unique Ligands	GOL

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4MBT \| pdb_00004mbt	Download File View File

Structure of haze forming proteins in white wines: Vitis vinifera thaumatin-like proteins

Marangon, M., Menz, R.I., Waters, E.J., Van Sluyter, S.C.

(2014) PLoS One 9: e113757-e113757

Released	2014-08-27
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Vitis vinifera
Macromolecule	VVTL1 (protein)
Unique Ligands	GOL

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5CH6 \| pdb_00005ch6	Download File View File

Crystal Structure of FRIGIDA Flowering-time Regulator

Hyun, K., Song, J.J.

(2016) Mol Plant 9: 618-620

Released	2016-05-25
Method	X-RAY DIFFRACTION 3.26 Å
Organisms	Vitis vinifera
Macromolecule	FRIGIDA (protein)

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5DZE \| pdb_00005dze	Download File View File

Crystal Structure of the catalytic nucleophile mutant of VvEG16 in complex with cellotetraose

McGregor, N.G.S., Tung, C.C., Van Petegem, F., Brumer, H.

(2017) Plant J 89: 651-670

Released	2016-09-21
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Vitis vinifera
Macromolecule	endo-glucanase (protein)
Unique Ligands	BGC
Unique branched monosaccharides	BGC, GLC

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5DZF \| pdb_00005dzf	Download File View File

Crystal Structure of the catalytic nucleophile mutant of VvEG16 in complex with a mixed-linkage glucan octasaccharide

McGregor, N.G.S., Tung, C.C., Van Petegem, F., Brumer, H.

(2017) Plant J 89: 651-670

Released	2016-09-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Vitis vinifera
Macromolecule	endo-glucanase (protein)
Unique Ligands	BGC, SO4
Unique branched monosaccharides	BGC, GLC

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2C1X | pdb_00002c1x

2C1Z | pdb_00002c1z

2C29 | pdb_00002c29

2C9Z | pdb_00002c9z

2IOD | pdb_00002iod

2NNL | pdb_00002nnl

2P3X | pdb_00002p3x

2RH8 | pdb_00002rh8

3BXX | pdb_00003bxx

3C1T | pdb_00003c1t

3HFS | pdb_00003hfs

3I52 | pdb_00003i52

3I5M | pdb_00003i5m

3I6I | pdb_00003i6i

3I6Q | pdb_00003i6q

3TSY | pdb_00003tsy

3TUU | pdb_00003tuu

4B2G | pdb_00004b2g

4HNN | pdb_00004hnn

4JRU | pdb_00004jru

4L5H | pdb_00004l5h

4MBT | pdb_00004mbt

5CH6 | pdb_00005ch6

5DZE | pdb_00005dze

5DZF | pdb_00005dzf