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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "synthetic construct"

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Search Summary

This query matches 10,308 Structures.

Refinements

Structure Determination Methodology

experimental (10,308)

Scientific Name of Source Organism

	synthetic construct (10,308)
	Homo sapiens (3,263)
	Mus musculus (332)
	Escherichia coli (283)
	Escherichia coli K-12 (234)
	Xenopus laevis (202)
	Saccharomyces cerevisiae S288C (191)
	Saccharomyces cerevisiae (184)
	Bos taurus (157)
	Severe acute respiratory syndrome coronavirus 2 (147)

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Taxonomy

	other sequences (10,308)
	Eukaryota (4,617)
	Bacteria (1,744)
	Riboviria (538)
	Archaea (248)
	Duplodnaviria (100)
	Varidnaviria (45)
	Monodnaviria (34)
	unclassified sequences (23)
	Viruses incertae sedis (2)

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Experimental Method

	X-RAY DIFFRACTION (7,712)
	ELECTRON MICROSCOPY (1,976)
	SOLUTION NMR (590)
	ELECTRON CRYSTALLOGRAPHY (23)
	NEUTRON DIFFRACTION (9)
	SOLID-STATE NMR (3)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (9,033)
	DNA (4,279)
	RNA (1,754)
	NA-hybrid (111)
	Other (3)

Refinement Resolution (Å)

	0.5 - 1.0 (86)
	1.0 - 1.5 (782)
	1.5 - 2.0 (2,220)
	2.0 - 2.5 (2,026)
	2.5 - 3.0 (1,948)
	3.0 - 3.5 (1,484)
	3.5 - 4.0 (533)
	4.0 - 4.5 (267)
	> 4.5 (372)

Release Date

	1990 - 1994 (11)
	1995 - 1999 (72)
	2000 - 2004 (116)
	2005 - 2009 (320)
	2010 - 2014 (1,036)
	2015 - 2019 (3,126)
	2020 - 2024 (5,315)
	2025 - 2029 (312)

Enzyme Classification Name

	Hydrolases (2,175)
	Transferases (1,848)
	Lyases (405)
	Isomerases (190)
	Oxidoreductases (106)
	Ligases (61)
	Translocases (7)

Membrane Protein Annotation

	PDBTM (441)
	mpstruc (316)
	MemProtMD (257)
	OPM (234)

Symmetry Type

	Asymmetric (6,640)
	Cyclic (2,140)
	Dihedral (212)
	Helical (71)
	Icosahedral (28)
	Tetrahedral (23)
	Octahedral (6)

SCOP Classification

	All beta proteins (166)
	Alpha and beta proteins (a+b) (148)
	All alpha proteins (100)
	Alpha and beta proteins (a/b) (110)
	Artifacts (86)
	Designed proteins (29)
	Small proteins (35)
	Multi-domain proteins (alpha and beta) (28)
	Low resolution protein structures (10)
	Peptides (20)

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AllSelected

1 to 25 of 10,308 Structures

Page 1 of 413

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134D \| pdb_0000134d	Download File View File

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

Patel, D.J., Radhakrishnan, I.

(1993) Structure 1: 135-152

Released	1994-04-30
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA TRIPLEX (nucleic acid)

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143D \| pdb_0000143d	Download File View File

SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX

Wang, Y., Patel, D.J.

(1993) Structure 1: 263-282

Released	1994-04-30
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(APGPGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPAPGPGPG)-3') (nucleic acid)

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1A7L \| pdb_00001a7l	Download File View File

DOMINANT B-CELL EPITOPE FROM THE PRES2 REGION OF HEPATITIS B VIRUS IN THE FORM OF AN INSERTED PEPTIDE SEGMENT IN MALTODEXTRIN-BINDING PROTEIN

Saul, F.A., Vulliez-Lenormand, B., Lema, F., Bentley, G.A.

(1998) J Mol Biology 280: 185-192

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	synthetic construct
Macromolecule	MALE-B363 (protein)
Unique branched monosaccharides	GLC

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1AG5 \| pdb_00001ag5	Download File View File

THE SOLUTION STRUCTURE OF AN AFLATOXIN B1 EPOXIDE ADDUCT AT THE N7 POSITION OF GUANINE OPPOSITE AN ADENINE IN THE COMPLEMENTARY STRAND OF AN OLIGODEOXYNUCLEOTIDE DUPLEX, NMR, MINIMIZED AVERAGE STRUCTURE

Johnson, D.S., Stone, M.P.

(1995) Biochemistry 34: 14037-14050

Released	1997-09-17
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPCPAPTPCPGPAPTPCPC)-3') (nucleic acid) DNA (5'-D(GPGPAPTPCPAPGPAPTPGP*G)-3') (nucleic acid)
Unique Ligands	AFN

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1AGS \| pdb_00001ags	Download File View File

A SURFACE MUTANT (G82R) OF A HUMAN ALPHA-GLUTATHIONE S-TRANSFERASE SHOWS DECREASED THERMAL STABILITY AND A NEW MODE OF MOLECULAR ASSOCIATION IN THE CRYSTAL

Zeng, K., Rose, J.P., Wang, B.C.

(1994) Proteins 20: 259-263

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	synthetic construct
Macromolecule	GLUTATHIONE S-TRANSFERASE ALPHA (protein)
Unique Ligands	GTX

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1AJF \| pdb_00001ajf	Download File View File

SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE

Kieft, J.S., Tinoco Junior, I.

(1997) Structure 5: 713-721

Released	1997-07-07
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(GPAPCPAPGPGPGPGPAPAPAPCPUPUPUPGPUPC)-3') (nucleic acid)
Unique Ligands	NCO

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1AL1 \| pdb_00001al1	Download File View File

CRYSTAL STRUCTURE OF ALPHA1: IMPLICATIONS FOR PROTEIN DESIGN

Hill, C.P., Anderson, D.H., Wesson, L., Degrado, W.F., Eisenberg, D.

(1990) Science 249: 543-546

Released	1991-10-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	synthetic construct
Macromolecule	ALPHA HELIX PEPTIDE: ELLKKLLEELKG (protein)
Unique Ligands	SO4

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1AL5 \| pdb_00001al5	Download File View File

A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES

Conte, M.R., Conn, G.L., Brown, T., Lane, A.N.

(1997) Nucleic Acids Res 25: 2627-2634

Released	1997-12-17
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(CPGPCPAPAPAPUPUPUPGPCPG)-3') (nucleic acid)

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1ALG \| pdb_00001alg	Download File View File

SOLUTION STRUCTURE OF AN HGR INHIBITOR, NMR, 10 STRUCTURES

Schott, M.K., Nordhoff, A., Becker, K., Kalbitzer, H.R., Schirmer, R.H.

(1997) Eur J Biochem 245: 273-282

Released	1997-10-15
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	P11 (protein)

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1B36 \| pdb_00001b36	Download File View File

SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES

Butcher, S.E., Dieckmann, T., Feigon, J.

(1999) Nat Struct Biol 6: 212-216

Released	1998-12-23
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (RNA LOOP B) (nucleic acid)

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1B69 \| pdb_00001b69	Download File View File

THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX

Clubb, R.T., Wojciak, J.M., Connolly, K.M.

(1999) Nat Struct Biol 6: 366-373

Released	1999-09-29
Method	SOLUTION NMR
Organisms	Enterococcus faecalis synthetic construct
Macromolecule	PROTEIN (INTEGRASE) (protein) DNA (5'-D(GPAPAPTPTPTPAPCPTPAPCPTPC)-3') (nucleic acid) DNA (5'-D(GPAPGPTPAPGPTPAPAPAPTPTPC)-3') (nucleic acid)

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1B9J \| pdb_00001b9j	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KLK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium synthetic construct
Macromolecule	PROTEIN (LYS-LEU-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B9P \| pdb_00001b9p	Download File View File

NMR STRUCTURE OF HEPARIN BINDING SITE OF NON COLLAGENOUS DOMAIN I (NC1) OF COLLAGEN FACIT XIV

Montserret, R., Deleage, G., Penin, F.

(1999) Biochemistry 38: 6479-6488

Released	1999-02-25
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	PROTEIN (COLLAGEN ALPHA 1) (protein)

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1B9Q \| pdb_00001b9q	Download File View File

NMR STRUCTURE OF HEPARIN BINDING SITE OF NON COLLAGENOUS DOMAIN I (NC1) OF COLLAGEN FACIT XIV

Montserret, R., Deleage, G., Penin, F.

(1999) Biochemistry 38: 6479-6488

Released	1999-02-25
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	PROTEIN (COLLAGEN ALPHA 1) (protein)

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1BAE \| pdb_00001bae	Download File View File

STRUCTURE OF DNA (5'-D 5MCCTTTACC-3')2, NMR, 1 STRUCTURE

Nonin, S., Tuan, A.P., Leroy, J.L.

(1997) Structure 5: 1231-1246

Released	1998-01-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(MCYPCPTPTPTPAPCPC)-3') (nucleic acid)

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1BB1 \| pdb_00001bb1	Download File View File

CRYSTAL STRUCTURE OF A DESIGNED, THERMOSTABLE HETEROTRIMERIC COILED COIL

Nautiyal, S., Alber, T.

(1999) Protein Sci 8: 84-90

Released	1999-02-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	synthetic construct
Macromolecule	DESIGNED, THERMOSTABLE HETEROTRIMERIC COILED COIL (protein)
Unique Ligands	CL

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1BIV \| pdb_00001biv	Download File View File

BOVINE IMMUNODEFICIENCY VIRUS TAT-TAR COMPLEX, NMR, 5 STRUCTURES

Ye, X., Kumar, R.A., Patel, D.J.

(1995) Chem Biol 2: 827-840

Released	1996-12-23
Method	SOLUTION NMR
Organisms	Bovine immunodeficiency virus synthetic construct
Macromolecule	TAT PEPTIDE (protein) TAR RNA (nucleic acid)

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1BPS \| pdb_00001bps	Download File View File

MINOR CONFORMER OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA

Schwartz, J.S., Rice, J.S., Luxon, B.A., Sayer, J.M., Xie, G., Yeh, H.J.C., Liu, X., Jerina, D.M., Gorenstein, D.G.

(1997) Biochemistry 36: 11069-11076

Released	1998-08-19
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPTPCPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPTPCP(BAP)APCPGPAPG)-3') (nucleic acid)
Unique Ligands	BAP

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1BPY \| pdb_00001bpy	Download File View File

HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP

Sawaya, M.R., Pelletier, H., Prasad, R., Wilson, S.H., Kraut, J.

(1997) Biochemistry 36: 11205-11215

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	PROTEIN (DNA POLYMERASE BETA) (protein) DNA (5'-D(CPCPGPAPCPGPGPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPDOC)-3') (nucleic acid) DNA (5'-D(GPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	DCT, MG, NA

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1BXX \| pdb_00001bxx	Download File View File

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN

Owen, D.J., Evans, P.R.

(1998) Science 282: 1327-1332

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rattus norvegicus synthetic construct
Macromolecule	PROTEIN (AP50) (protein) PROTEIN (TGN38 PEPTIDE) (protein)

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1BYH \| pdb_00001byh	Download File View File

MOLECULAR AND ACTIVE-SITE STRUCTURE OF A BACILLUS (1-3,1-4)-BETA-GLUCANASE

Keitel, T., Heinemann, U.

(1993) Proc Natl Acad Sci U S A 90: 5287-5291

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	synthetic construct
Macromolecule	HYBRID (protein)
Unique Ligands	CA, NBU
Unique branched monosaccharides	BGC

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1BYZ \| pdb_00001byz	Download File View File

DESIGNED PEPTIDE ALPHA-1, P1 FORM

Prive, G.G., Anderson, D.H., Wesson, L., Cascio, D., Eisenberg, D.

(1999) Protein Sci 8: 1400-1409

Released	1998-10-28
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	synthetic construct
Macromolecule	PROTEIN (SYNTHETIC DESIGNED PEPTIDE "ALPHA-1") (protein)
Unique Ligands	CL, ETA, MPD, MRD

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1BZV \| pdb_00001bzv	Download File View File

[D-ALAB26]-DES(B27-B30)-INSULIN-B26-AMIDE A SUPERPOTENT SINGLE-REPLACEMENT INSULIN ANALOGUE, NMR, MINIMIZED AVERAGE STRUCTURE

Kurapkat, G., Siedentopf, M., Gattner, H.G., Hagelstein, M., Brandenburg, D., Grotzinger, J., Wollmer, A.

(1999) Protein Sci 8: 499-508

Released	1999-05-18
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	INSULIN (protein)

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1CA5 \| pdb_00001ca5	Download File View File

INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA

Su, S., Gao, Y.-G., Robinson, H., Shriver, J.W., Wang, A.H.-J.

(2000) J Mol Biology 303: 395-403

Released	2000-02-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfolobus acidocaldarius synthetic construct
Macromolecule	CHROMOSOMAL PROTEIN SAC7D (protein) 5'-D(GPTPGPAPTPCPAPC)-3' (nucleic acid)

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1CA6 \| pdb_00001ca6	Download File View File

INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA

Su, S., Gao, Y.-G., Robinson, H., Shriver, J.W., Wang, A.H.-J.

(2000) J Mol Biology 303: 395-403

Released	2000-02-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfolobus acidocaldarius synthetic construct
Macromolecule	CHROMOSOMAL PROTEIN SAC7D (protein) 5'-D(GPTPGPAPTPCPGPC)-3' (nucleic acid)

1 to 25 of 10,308 Structures

Page 1 of 413

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

134D | pdb_0000134d

143D | pdb_0000143d

1A7L | pdb_00001a7l

1AG5 | pdb_00001ag5

1AGS | pdb_00001ags

1AJF | pdb_00001ajf

1AL1 | pdb_00001al1

1AL5 | pdb_00001al5

1ALG | pdb_00001alg

1B36 | pdb_00001b36

1B69 | pdb_00001b69

1B9J | pdb_00001b9j

1B9P | pdb_00001b9p

1B9Q | pdb_00001b9q

1BAE | pdb_00001bae

1BB1 | pdb_00001bb1

1BIV | pdb_00001biv

1BPS | pdb_00001bps

1BPY | pdb_00001bpy

1BXX | pdb_00001bxx

1BYH | pdb_00001byh

1BYZ | pdb_00001byz

1BZV | pdb_00001bzv

1CA5 | pdb_00001ca5

1CA6 | pdb_00001ca6