RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Keywords HAS EXACT PHRASE "APOPTOSIS INHIBITOR"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 89 Structures.

Refinements

Structure Determination Methodology

experimental (89)

Scientific Name of Source Organism

	Homo sapiens (84)
	Escherichia coli O157:H7 (2)
	Mus musculus (2)
	Rattus norvegicus (2)
	synthetic construct (2)
	Drosophila melanogaster (1)
	Myxoma virus (1)

Taxonomy

	Eukaryota (88)
	Eukaryota (eukaryotes) (5)
	Bacteria (2)
	other sequences (2)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (84)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (89)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (33)
	2.0 - 2.5 (24)
	2.5 - 3.0 (20)
	3.0 - 3.5 (5)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (6)
	2010 - 2014 (27)
	2015 - 2019 (36)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (15)
	Ligases (6)

Symmetry Type

	Asymmetric (69)
	Cyclic (29)

SCOP Classification

	Membrane and cell surface proteins and peptides (44)
	Artifacts (32)
	Small proteins (13)
	Alpha and beta proteins (a+b) (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 89 Structures

Page 1 of 4

Sort by

Explore in 3D

1E31 \| pdb_00001e31	Download File View File

SURVIVIN DIMER H. SAPIENS

Chantalat, L., Skoufias, D.A., Margolis, R.L., Dideberg, O.

(2000) Mol Cell 6: 183

Released	2001-01-03
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Homo sapiens
Macromolecule	APOPTOSIS INHIBITOR SURVIVIN (protein)
Unique Ligands	CO, ZN

Explore in 3D

1F9X \| pdb_00001f9x	Download File View File

AVERAGE NMR SOLUTION STRUCTURE OF THE BIR-3 DOMAIN OF XIAP

Sun, C., Cai, M., Meadows, R.P., Fesik, S.W.

(2000) J Biological Chem 275: 33777-33781

Released	2001-07-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	INHIBITOR OF APOPTOSIS PROTEIN XIAP (protein)
Unique Ligands	ZN

Explore in 3D

1Q4Q \| pdb_00001q4q	Download File View File

Crystal structure of a DIAP1-Dronc complex

Chai, J., Yan, N., Shi, Y.

(2003) Nat Struct Biol 10: 892-898

Released	2003-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Drosophila melanogaster
Macromolecule	Apoptosis 1 inhibitor (protein) Nedd2-like caspase CG8091-PA (protein)
Unique Ligands	ZN

Explore in 3D

2B48 \| pdb_00002b48	Download File View File

Bcl-XL 3D Domain Swapped Dimer

O'Neill, J.W., Manion, M.K., Maguire, B., Hockenbery, D.M.

(2006) J Mol Biology 356: 367-381

Released	2006-02-14
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)

Explore in 3D

2L9M \| pdb_00002l9m	Download File View File

Structure of cIAP1 CARD

Day, C.L., Rautureau, G.J.P., Hinds, M.G.

(2011) Mol Cell 42: 569-583

Released	2011-08-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)

Explore in 3D

2O42 \| pdb_00002o42	Download File View File

Crystal Structure of M11L, Bcl-2 homolog from myxoma virus

Douglas, A.E.

(2007) Protein Sci 16: 695-703

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Myxoma virus
Macromolecule	M11L protein (protein)

Explore in 3D

2OPZ \| pdb_00002opz	Download File View File

AVPF bound to BIR3-XIAP

Wist, A.D.

(2007) Bioorg Med Chem 15: 2935-2943

Released	2007-02-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	AVPF (Smac homologue, N-terminal tetrapeptide) (protein) Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	ZN

Explore in 3D

2PON \| pdb_00002pon	Download File View File

Solution structure of the Bcl-xL/Beclin-1 complex

Feng, W., Huang, S., Wu, H., Zhang, M.

(2007) J Mol Biology 372: 223-235

Released	2007-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein) Beclin-1 (protein)

Explore in 3D

3MUP \| pdb_00003mup	Download File View File

cIAP1-BIR3 domain in complex with the Smac-mimetic compound Smac037

Cossu, F., Malvezzi, F., Canevari, G., Milani, M.

(2010) Protein Sci 19: 2418-2429

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	SMK, ZN

Explore in 3D

3OZ1 \| pdb_00003oz1	Download File View File

cIAP1-BIR3 domain in complex with the Smac-mimetic compound Smac066

Cossu, F., Malvezzi, F., Mastrangelo, E., Canevari, G., Bolognesi, M., Milani, M.

(2010) Protein Sci

Released	2010-11-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	BMB, ZN

Explore in 3D

3QKD \| pdb_00003qkd	Download File View File

Crystal structure of Bcl-xL in complex with a Quinazoline sulfonamide inhibitor

Czabotar, P.E., Smith, B.J.

(2011) J Med Chem 54: 1914-1926

Released	2011-04-06
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2-like protein 1 (protein)
Unique Ligands	CL, GOL, HI0

Explore in 3D

3U0R \| pdb_00003u0r	Download File View File

Helical repeat structure of apoptosis inhibitor 5 reveals protein-protein interaction modules

Han, B.G., Kim, K.H., Jeong, K.C., Cho, J.W., Noh, K.H., Kim, T.W., Yoon, H.J., Suh, S.W., Lee, S.H., Lee, B.I.

(2012) J Biological Chem 287: 10727-10737

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis inhibitor 5 (protein)

Explore in 3D

3UW4 \| pdb_00003uw4	Download File View File

Crystal structure of cIAP1 BIR3 bound to GDC0152

Maurer, B., Hymowitz, S.

(2012) J Med Chem 55: 4101-4113

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2, Baculoviral IAP repeat-containing protein 4 (protein) GDC0152 (protein)
Unique Ligands	ZN

Explore in 3D

3UW5 \| pdb_00003uw5	Download File View File

Crystal structure of the BIR domain of MLIAP bound to GDC0152

Maurer, B., Hymowitz, S.G.

(2012) J Med Chem 55: 4101-4113

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 7, Baculoviral IAP repeat-containing protein 4 (protein) GDC-0152 (protein)
Unique Ligands	SO4, ZN

Explore in 3D

3V6A \| pdb_00003v6a	Download File View File

Helical repeat structure of apoptosis inhibitor 5 reveals protein-protein interaction modules

Lee, B.I., Han, B.G., Lee, S.J.

(2012) J Biological Chem 287: 10727-10737

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis inhibitor 5 (protein)

Explore in 3D

4A1W \| pdb_00004a1w	Download File View File

Crystal structure of alpha-beta foldamer 4c in complex with Bcl-xL

Boersma, M.D., Haase, H.S., Kaufman, K.J., Horne, W.S., Lee, E.F., Clarke, O.B., Smith, B.J., Colman, P.M., Gellman, S.H., Fairlie, W.D.

(2012) J Am Chem Soc 134: 315

Released	2011-12-28
Method	X-RAY DIFFRACTION 2.497 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ALPHA-BETA-FOLDAMER 2C (protein) BCL-2-LIKE PROTEIN 1 (protein)

Explore in 3D

4EB9 \| pdb_00004eb9	Download File View File

cIAP1-BIR3 in complex with a divalent Smac mimetic

Cossu, F., Mastrangelo, E., Bolognesi, M., Milani, M.

(2012) PLoS One 7: e49527-e49527

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	0O6, ZN

Explore in 3D

4EC4 \| pdb_00004ec4	Download File View File

XIAP-BIR3 in complex with a potent divalent Smac mimetic

Mastrangelo, E., Cossu, F., Bolognesi, M., Milani, M.

(2012) PLoS One 7: e49527-e49527

Released	2012-12-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	0O6, 2PE, P33, ZN

Explore in 3D

4G35 \| pdb_00004g35	Download File View File

Mcl-1 in complex with a biphenyl cross-linked Noxa peptide.

Drake, E., Edwardraja, S., Lin, Q., Gulick, A.M.

(2012) J Am Chem Soc 134: 14734-14737

Released	2012-12-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 homolog (protein) Noxa BH3 peptide (cysteine-mediated cross-linked) (protein)
Unique Ligands	4BP

Explore in 3D

4HW2 \| pdb_00004hw2	Download File View File

Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design

Zhao, B.

(2013) J Med Chem 56: 15-30

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	19H, EDO, PGE

Explore in 3D

4HW3 \| pdb_00004hw3	Download File View File

Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design

Zhao, B.

(2013) J Med Chem 56: 15-30

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	19G

Explore in 3D

4IEH \| pdb_00004ieh	Download File View File

Crystal Structure of human Bcl-2 in complex with a small molecule inhibitor targeting Bcl-2 BH3 domain interactions

Xie, X., Kulathila, R.

(2013) ACS Med Chem Lett 4: 186-190

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2, Bcl-2-like protein 1 chimera (protein)
Unique Ligands	1E9

Explore in 3D

4MTI \| pdb_00004mti	Download File View File

Crystal structure of cIAP1 BIR3 bound to T3258042

Snell, G.P., Dougan, D.R.

(2013) Bioorg Med Chem 21: 7938-7954

Released	2013-12-11
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	2DX, ZN

Explore in 3D

4MU7 \| pdb_00004mu7	Download File View File

Crystal structure of cIAP1 BIR3 bound to T3450325

Snell, G.P., Dougan, D.R.

(2013) Bioorg Med Chem 21: 7938-7954

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	2DY, ZN

Explore in 3D

4OQ5 \| pdb_00004oq5	Download File View File

Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid

Petros, A.M., Swann, S.L., Song, D., Swinger, K., Park, C., Zhang, H., Wendt, M.D., Kunzer, A.R., Souers, A.J., Sun, C.

(2014) Bioorg Med Chem Lett 24: 1484-1488

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	2UU

1 to 25 of 89 Structures

Page 1 of 4

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1E31 | pdb_00001e31

1F9X | pdb_00001f9x

1Q4Q | pdb_00001q4q

2B48 | pdb_00002b48

2L9M | pdb_00002l9m

2O42 | pdb_00002o42

2OPZ | pdb_00002opz

2PON | pdb_00002pon

3MUP | pdb_00003mup

3OZ1 | pdb_00003oz1

3QKD | pdb_00003qkd

3U0R | pdb_00003u0r

3UW4 | pdb_00003uw4

3UW5 | pdb_00003uw5

3V6A | pdb_00003v6a

4A1W | pdb_00004a1w

4EB9 | pdb_00004eb9

4EC4 | pdb_00004ec4

4G35 | pdb_00004g35

4HW2 | pdb_00004hw2

4HW3 | pdb_00004hw3

4IEH | pdb_00004ieh

4MTI | pdb_00004mti

4MU7 | pdb_00004mu7

4OQ5 | pdb_00004oq5