RCSB PDB: Search

1B01 \| pdb_00001b01	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(CPCPCPGPTPGPCPAPCPTPCPAPAPTPGPCPAPAPT)-3') (nucleic acid) DNA (5'-D(GPAPTPTPGPCPAPTPTPGPAPGPTPGPCPAPCPGPG)-3') (nucleic acid)

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1BDT \| pdb_00001bdt	Download File View File

WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX

Schilbach, J.F., Karzai, A.W., Raumann, B.E., Sauer, R.T.

(1999) Proc Natl Acad Sci U S A 96: 811-817

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lederbergvirus P22
Macromolecule	PROTEIN (GENE-REGULATING PROTEIN ARC) (protein) DNA (5'-D(APAPTPGPAPTPAPGPAPAPGPCPAPCPTPCPTPAPCPTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPGPTPAPGPAPGPTPGPCPTPTPCPTPAPTPCPAPT)-3') (nucleic acid)

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1BDV \| pdb_00001bdv	Download File View File

ARC FV10 COCRYSTAL

Schildbach, J.F., Karzai, A.W., Raumann, B.E., Sauer, R.T.

(1999) Proc Natl Acad Sci U S A 96: 811-817

Released	1999-01-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Lederbergvirus P22
Macromolecule	PROTEIN (ARC FV10 REPRESSOR) (protein) DNA (5'-D(APAPTPGPAPTPAPGPAPAPGPCPAPCPTPCPTPAPCPTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPGPTPAPGPAPGPTPGPCPTPTPCPTPAPTPCPAPT)-3') (nucleic acid)

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1BF5 \| pdb_00001bf5	Download File View File

TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX

Kuriyan, J., Zhao, Y., Chen, X., Vinkemeier, U., Jeruzalmi, D., Darnell Jr., J.E.

(1998) Cell 93: 827-839

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 1-ALPHA/BETA (protein) DNA (5'-D(APCPAPGPTPTPTPCPCPCPGPTPAPAPAPTPG PC)-3') (nucleic acid) DNA (5'-D(TPGPCPAPTPTPTPAPCPGPGPGPAPAPAPCPT PG)-3') (nucleic acid)

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1BY4 \| pdb_00001by4	Download File View File

STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA

Zhao, Q., Chasse, S.A., Devarakonda, S., Sierk, M.L., Ahvazi, B., Sigler, P.B., Rastinejad, F.

(2000) J Mol Biology 296: 509-520

Released	2000-01-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA) (protein) DNA (5'-D(CTPAPGPGPTPCPAPAPAPGPGPTPCPAPG)-3') (nucleic acid) DNA (5'-D(CPTPGPAPCPCPTPTPTPGPAPCPCPTP*A)-3') (nucleic acid)
Unique Ligands	ZN

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1C0W \| pdb_00001c0w	Download File View File

CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR-DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAIN

Pohl, E., Holmes, R.K., Hol, W.G.

(1999) J Mol Biology 292: 653-667

Released	2000-07-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein) DNA (5'-D(PAPTPTPAPGPGPTPTPAPGPCPCPTPAPCPCPCPTPAPAPT)-3') (nucleic acid) DNA (5'-D(PAPTPTPAPGPGPTPTPAPGPGPCPTPAPCPCPCPTPAPAPT)-3') (nucleic acid)
Unique Ligands	CO

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1CKT \| pdb_00001ckt	Download File View File

CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX

Ohndorf, U.-M., Rould, M.A., Pabo, C.O., Lippard, S.J.

(1999) Nature 399: 708-712

Released	1999-06-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	HIGH MOBILITY GROUP 1 PROTEIN (protein) DNA (5'-D(CPCP(5IU)PCPTPCPTPGPGPAPCPCPTPTPCPC)-3') (nucleic acid) DNA (5'-D(GPGPAPAPGPGPTPCPCPAPGPAPGPAPGPG)-3') (nucleic acid)
Unique Ligands	CPT

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1CQT \| pdb_00001cqt	Download File View File

CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT

Chasman, D.I., Cepek, K., Sharp, P.A., Pabo, C.O.

(1999) Genes Dev 13: 2650-2657

Released	1999-11-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	POU DOMAIN, CLASS 2, ASSOCIATING FACTOR 1 (protein) POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 (protein) DNA (5'-D(APCPCPTPTPAPTPTPTPGPCPAPTPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPAPTPGPCPAPAPAPTPAPAPGPG)-3') (nucleic acid)

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1D3U \| pdb_00001d3u	Download File View File

TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI

Littlefield, O., Korkhin, Y., Sigler, P.B.

(1999) Proc Natl Acad Sci U S A 96: 13668-13673

Released	1999-11-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus woesei
Macromolecule	TATA-BINDING PROTEIN (protein) TRANSCRIPTION INITIATION FACTOR IIB (protein) DNA 23-MER: BRE+TATA-BOX (nucleic acid) DNA 24-MER: BRE+TATA-BOX (nucleic acid)

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1DDN \| pdb_00001ddn	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX

White, A., Ding, X., Vanderspek, J.C., Murphy, J.R., Ringe, D.

(1998) Nature 394: 502-506

Released	1998-10-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR (protein) 33 BASE DNA CONTAINING TOXIN OPERATOR (nucleic acid)
Unique Ligands	NI

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1EA4 \| pdb_00001ea4	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX

Gomis-Rueth, F.X., Costa, M., Sola, M., Acebo, P., Eritja, R., Espinosa, M., Solar, G.D., Coll, M.

(2001) J Mol Biology 310: 403

Released	2001-07-05
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(TPAPAPCPCPGPTPGP CPAPCPTPCPAPAPTPGPCPAPAPTPC)-3') (nucleic acid) DNA(5'-D(APGPAPTPTPGPCPAPTP TPGPAPGPTPGPCPAPCPGPGPTPT)-3') (nucleic acid)

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1HWT \| pdb_00001hwt	Download File View File

STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN

King, D.A., Zhang, L., Guarente, L., Marmorstein, R.

(1999) Nat Struct Biol 6: 64-71

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (HEME ACTIVATOR PROTEIN) (protein) DNA (5'-D(GPCPGPCPTPAPTPTPAPTPCPGPCPTPAPTPTPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPAPAPTPAPGPCPGPAPTPAPAPTPAPGPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1J59 \| pdb_00001j59	Download File View File

CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

Parkinson, G., Wilson, C., Gunasekera, A., Ebright, Y.W., Ebright, R.H., Berman, H.M.

(1996) J Mol Biology 260: 395-408

Released	2002-03-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (CAP) (protein) 5'-D(APTPAPTPGPTPCPAPCPAPCPTPTPTPTPCPG )-3' (nucleic acid) 5'-D(GPCPGPAPAPAPAPGPTPGPTPGPAP*C)-3' (nucleic acid)
Unique Ligands	CMP

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1LB2 \| pdb_00001lb2	Download File View File

Structure of the E. coli alpha C-terminal domain of RNA polymerase in complex with CAP and DNA

Benoff, B., Yang, H., Lawson, C.L., Parkinson, G., Liu, J., Blatter, E., Ebright, Y.W., Berman, H.M., Ebright, R.H.

(2002) Science 297: 1562-1566

Released	2002-09-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) DNA-directed RNA polymerase alpha chain (protein) 5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPAPGPGPAPAPAPAPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPTPTPTPTPCPCPTPAPAPAPAPTPGPTPGPAPT)-3' (nucleic acid)
Unique Ligands	CMP

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1LCC \| pdb_00001lcc	Download File View File

STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS

Chuprina, V.P., Rullmann, J.A.C., Lamerichs, R.M.J.N., Van Boom, J.H., Boelens, R., Kaptein, R.

(1993) J Mol Biology 234: 446-462

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lac Repressor (protein) DNA (5'-D(APAPTPTPGPTPGPAPGPCPG)-3') (nucleic acid) DNA (5'-D(CPGPCPTPCPAPCPAPAPTPT)-3') (nucleic acid)
Unique Ligands	NA

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1LCD \| pdb_00001lcd	Download File View File

STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS

Chuprina, V.P., Rullmann, J.A.C., Lamerichs, R.M.J.N., Van Boom, J.H., Boelens, R., Kaptein, R.

(1993) J Mol Biology 234: 446-462

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lac Repressor (protein) DNA (5'-D(APAPTPTPGPTPGPAPGPCPG)-3') (nucleic acid) DNA (5'-D(CPGPCPTPCPAPCPAPAPTPT)-3') (nucleic acid)
Unique Ligands	NA

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1O3Q \| pdb_00001o3q	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 63-74

Released	2003-04-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(APAPAPAPAPTPGPTPGPAPT)-3' (nucleic acid) 5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	CMP

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1O3R \| pdb_00001o3r	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 63-74

Released	2003-04-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(APAPAPAPAPTPGPCPGPAPT)-3' (nucleic acid) 5'-D(CPTPAPGPAPTPCPGPCPAPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	CMP

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1O3S \| pdb_00001o3s	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 75-82

Released	2003-04-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(APAPAPAPAPTPGPCPGPAPT)-3' (nucleic acid) 5'-D(CPTPAPGPAPTPCPGPCPAPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	CMP

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1O3T \| pdb_00001o3t	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 63-74

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(CPTPAPGPAPTPCPGPCPAPTPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(GPCPGPAPAPAPAPAPTPGPCPGPAP*T)-3' (nucleic acid)
Unique Ligands	CMP

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1PDN \| pdb_00001pdn	Download File View File

CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONS

Xu, W., Rould, M.A., Jun, S., Desplan, C., Pabo, C.O.

(1995) Cell 80: 639-650

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Drosophila melanogaster
Macromolecule	PROTEIN (PRD PAIRED) (protein) DNA (5'-D(APAPCPGPTPCPAPCPGPGPTPTPGPAPC)-3') (nucleic acid) DNA (5'-D(TPTPGPTPCPAPAPCPCPGPTPGPAPCPG)-3') (nucleic acid)

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1QQA \| pdb_00001qqa	Download File View File

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.

(1999) J Mol Biology 291: 347-361

Released	1999-06-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) (protein) DNA (5'-D(TPAPCPGPCPAPAPGPCPGPCPTPTPGPCPGP*T)-3') (nucleic acid)
Unique Ligands	HPA

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1QQB \| pdb_00001qqb	Download File View File

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.

(1999) J Mol Biology 291: 347-361

Released	1999-06-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	PURINE NUCLEOTIDE SYNTHESIS REPRESSOR (protein) 5'-D(TPAPCPGPCPAPAPTPCPGPAPTPTPGPCPGP*T)-3' (nucleic acid)
Unique Ligands	HPA

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1QRV \| pdb_00001qrv	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA

Murphy IV, F.V., Sweet, R.M., Churchill, M.E.A.

(1999) EMBO J 18: 6610-6618

Released	1999-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Drosophila melanogaster
Macromolecule	HIGH MOBILITY GROUP PROTEIN D (protein) DNA (5'-D(GPCPGPAPTPAPTPCPGPC)-3') (nucleic acid)
Unique Ligands	NA

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1RPE \| pdb_00001rpe	Download File View File

THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION

Shimon, L.J.W., Harrison, S.C.

(1993) J Mol Biology 232: 826-838

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Phage 434
Macromolecule	PROTEIN (434 REPRESSOR) (protein) DNA (5'-D(APCPAPAPAPCPAPAPGPAPTPAPCPAPTPTPG PTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPCPAPAPTPGPTPAPTPCPTPTPGPT PTPTPG)-3') (nucleic acid)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1B01 | pdb_00001b01

1BDT | pdb_00001bdt

1BDV | pdb_00001bdv

1BF5 | pdb_00001bf5

1BY4 | pdb_00001by4

1C0W | pdb_00001c0w

1CKT | pdb_00001ckt

1CQT | pdb_00001cqt

1D3U | pdb_00001d3u

1DDN | pdb_00001ddn

1EA4 | pdb_00001ea4

1HWT | pdb_00001hwt

1J59 | pdb_00001j59

1LB2 | pdb_00001lb2

1LCC | pdb_00001lcc

1LCD | pdb_00001lcd

1O3Q | pdb_00001o3q

1O3R | pdb_00001o3r

1O3S | pdb_00001o3s

1O3T | pdb_00001o3t

1PDN | pdb_00001pdn

1QQA | pdb_00001qqa

1QQB | pdb_00001qqb

1QRV | pdb_00001qrv

1RPE | pdb_00001rpe