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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "REPLICATION"

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Search Summary

This query matches 916 Structures.

Refinements

Structure Determination Methodology

experimental (916)

Scientific Name of Source Organism

	Homo sapiens (302)
	synthetic construct (198)
	Saccharomyces cerevisiae (110)
	Escherichia coli (43)
	Saccharomyces cerevisiae S288C (38)
	Geobacillus stearothermophilus (27)
	Escherichia coli K-12 (24)
	Xenopus laevis (21)
	Mus musculus (14)
	Severe acute respiratory syndrome coronavirus 2 (14)

More...

Taxonomy

	Eukaryota (516)
	other sequences (201)
	Bacteria (157)
	Archaea (78)
	Riboviria (56)
	Duplodnaviria (47)
	Monodnaviria (35)
	Varidnaviria (31)
	unclassified sequences (8)
	Eukaryota (eukaryotes) (2)

More...

Experimental Method

	X-RAY DIFFRACTION (609)
	ELECTRON MICROSCOPY (280)
	SOLUTION NMR (27)

Polymer Entity Type

	Protein (915)
	DNA (429)
	RNA (47)
	NA-hybrid (9)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (34)
	1.5 - 2.0 (193)
	2.0 - 2.5 (174)
	2.5 - 3.0 (187)
	3.0 - 3.5 (138)
	3.5 - 4.0 (84)
	4.0 - 4.5 (32)
	> 4.5 (46)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (7)
	2000 - 2004 (73)
	2005 - 2009 (102)
	2010 - 2014 (92)
	2015 - 2019 (182)
	2020 - 2024 (435)
	2025 - 2029 (23)

Enzyme Classification Name

	Hydrolases (252)
	Transferases (419)
	Isomerases (27)
	Lyases (29)
	Ligases (5)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (743)
	Cyclic (172)
	Dihedral (14)
	Helical (7)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (86)
	All alpha proteins (42)
	Alpha and beta proteins (a/b) (43)
	Multi-domain proteins (alpha and beta) (56)
	All beta proteins (34)
	Artifacts (37)
	Coiled coil proteins (2)
	Small proteins (2)
	Peptides (3)

AllSelected

1 to 25 of 916 Structures

Page 1 of 37

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1C4O \| pdb_00001c4o	Download File View File

CRYSTAL STRUCTURE OF THE DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB FROM THERMUS THERMOPHILUS

Machius, M., Henry, L., Palnitkar, M., Deisenhofer, J.

(1999) Proc Natl Acad Sci U S A 96: 11717-11722

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB (protein)
Unique Ligands	BOG, SO4

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1EWI \| pdb_00001ewi	Download File View File

HUMAN REPLICATION PROTEIN A: GLOBAL FOLD OF THE N-TERMINAL RPA-70 DOMAIN REVEALS A BASIC CLEFT AND FLEXIBLE C-TERMINAL LINKER

Jacobs, D.M., Lipton, A.S., Isern, N.G., Daughdrill, G.W., Lowry, D.F., Gomes, X., Wold, M.S.

(1999) J Biomol NMR 14: 321-331

Released	2000-05-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	REPLICATION PROTEIN A (protein)

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1F08 \| pdb_00001f08	Download File View File

CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE REPLICATION INITIATION PROTEIN E1 FROM PAPILLOMAVIRUS

Enemark, E.J., Chen, G., Vaughn, D.E., Stenlund, A., Joshua-Tor, L.

(2000) Mol Cell 6: 149-158

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bovine papillomavirus
Macromolecule	REPLICATION PROTEIN E1 (protein)
Unique Ligands	BR

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1F2T \| pdb_00001f2t	Download File View File

Crystal Structure of ATP-Free RAD50 ABC-ATPase

Hopfner, K.P., Karcher, A., Shin, D.S., Craig, L.

(2000) Cell 101: 789-800

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	RAD50 ABC-ATPASE (protein)

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1F2U \| pdb_00001f2u	Download File View File

Crystal Structure of RAD50 ABC-ATPase

Hopfner, K.P., Karcher, A., Shin, D.S., Craig, L.

(2000) Cell 101: 789-800

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	RAD50 ABC-ATPASE (protein)
Unique Ligands	ATP, MG

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1FGU \| pdb_00001fgu	Download File View File

SSDNA-BINDING DOMAIN OF THE LARGE SUBUNIT OF REPLICATION PROTEIN A

Bochkareva, E., Belegu, V., Korolev, S., Bochkarev, A.

(2001) EMBO J 20: 612-618

Released	2001-02-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT (protein)

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1G71 \| pdb_00001g71	Download File View File

CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS DNA PRIMASE

Augustin, M.A., Huber, R., Kaiser, J.T.

(2001) Nat Struct Biol 8: 57-61

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA PRIMASE (protein)
Unique Ligands	CL, SO4, ZN

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1II7 \| pdb_00001ii7	Download File View File

Crystal structure of P. furiosus Mre11 with manganese and dAMP

Hopfner, K.-P., Karcher, A., Craig, L., Woo, T.T., Carney, J.P., Tainer, J.A.

(2001) Cell 105: 473-485

Released	2001-05-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	Mre11 nuclease (protein)
Unique Ligands	D5M, MN, PO4, SO4

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1II8 \| pdb_00001ii8	Download File View File

Crystal structure of the P. furiosus Rad50 ATPase domain

Hopfner, K.-P., Karcher, A., Craig, L., Woo, T.T., Carney, J.P., Tainer, J.A.

(2001) Cell 105: 473-485

Released	2001-05-30
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Pyrococcus furiosus
Macromolecule	Rad50 ABC-ATPase (protein)
Unique Ligands	PO4

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1IQP \| pdb_00001iqp	Download File View File

Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus

Oyama, T., Ishino, Y., Cann, I.K.O., Ishino, S., Morikawa, K.

(2001) Mol Cell 8: 455-463

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrococcus furiosus
Macromolecule	RFCS (protein)
Unique Ligands	ADP

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1J0R \| pdb_00001j0r	Download File View File

Crystal structure of the replication termination protein mutant C110S

Vivian, J.P., Hastings, A.F., Duggin, I.G., Wake, R.G., Wilce, M.C.J., Wilce, J.A.

(2003) Biochem Biophys Res Commun 310: 1096-1103

Released	2003-11-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	replication termination protein (protein)

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1L8D \| pdb_00001l8d	Download File View File

Rad50 coiled-coil Zn hook

Hopfner, K.P., Tainer, J.A.

(2002) Nature 418: 562-566

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	CIT, HG, PO4

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1LTL \| pdb_00001ltl	Download File View File

THE DODECAMER STRUCTURE OF MCM FROM ARCHAEAL M. THERMOAUTOTROPHICUM

Fletcher, R.J., Bishop, B.E., Leon, R.P., Sclafani, R.A., Ogata, C.M., Chen, X.S.

(2003) Nat Struct Biol 10: 160-167

Released	2003-05-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	DNA replication initiator (Cdc21/Cdc54) (protein)
Unique Ligands	ZN

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1NLF \| pdb_00001nlf	Download File View File

Crystal Structure of DNA Helicase RepA in complex with sulfate at 1.95 A resolution

Xu, H., Strater, N., Schroeder, W., Bottcher, C., Ludwig, K., Saenger, W.

(2003) Acta Crystallogr D Biol Crystallogr 59: 815-822

Released	2003-04-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Regulatory protein repA (protein)
Unique Ligands	SO4

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1NO1 \| pdb_00001no1	Download File View File

Structure of truncated variant of B.subtilis SPP1 phage G39P helicase loader/inhibitor protein

Bailey, S., Sedelnikova, S.E., Mesa, P., Ayora, S., Waltho, J.P., Ashcroft, A.E., Baron, A.J., Alonso, J.C., Rafferty, J.B.

(2003) J Biological Chem 278: 15304-15312

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus phage SPP1
Macromolecule	replisome organizer (protein)

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1NUI \| pdb_00001nui	Download File View File

Crystal Structure of the primase fragment of Bacteriophage T7 primase-helicase protein

Kato, M., Ito, T., Wagner, G., Richardson, C.C., Ellenberger, T.

(2003) Mol Cell 11: 1349-1360

Released	2003-05-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia phage T7
Macromolecule	DNA primase/helicase (protein)
Unique Ligands	MG, ZN

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1OQY \| pdb_00001oqy	Download File View File

Structure of the DNA repair protein hHR23a

Walters, K.J., Lech, P.J., Goh, A.M., Wang, Q., Howley, P.M.

(2003) Proc Natl Acad Sci U S A 100: 12694-12699

Released	2003-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UV excision repair protein RAD23 homolog A (protein)

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1P98 \| pdb_00001p98	Download File View File

High-resolution NMR structure of the Ubl-domain of HHR23A

Mueller, T.D., Feigon, J.

(2003) EMBO J 22: 4634-4645

Released	2003-10-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UV excision repair protein RAD23 homolog A (protein)

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1P9D \| pdb_00001p9d	Download File View File

High-resolution structure of the complex of HHR23A ubiquitin-like domain and the C-terminal ubiquitin-interacting motif of proteasome subunit S5a

Mueller, T.D., Feigon, J.

(2003) EMBO J 22: 4634-4645

Released	2003-10-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	26S proteasome non-ATPase regulatory subunit 4 (protein) UV excision repair protein RAD23 homolog A (protein)

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1QMP \| pdb_00001qmp	Download File View File

Phosphorylated aspartate in the crystal structure of the sporulation response regulator, Spo0A

Lewis, R.J., Brannigan, J.A., Muchova, K., Barak, I., Wilkinson, A.J.

(1999) J Mol Biology 294: 9-15

Released	1999-11-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Stage 0 sporulation protein A (protein)
Unique Ligands	CA

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1QZE \| pdb_00001qze	Download File View File

HHR23a protein structure based on residual dipolar coupling data

Walters, K.J., Lech, P.J., Goh, A.M., Wang, Q., Howley, P.M.

(2003) Proc Natl Acad Sci U S A 100: 12694-12699

Released	2003-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UV excision repair protein RAD23 homolog A (protein)

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1R9W \| pdb_00001r9w	Download File View File

Crystal Structure of the DNA-binding domain of the human papillomavirus type 18 (HPV-18) replication initiation protein E1

Auster, A.S., Joshua-Tor, L.

(2004) J Biological Chem 279: 3733-3742

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	human papillomavirus 18
Macromolecule	Replication protein E1 (protein)

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1RNI \| pdb_00001rni	Download File View File

Bifunctional DNA primase/polymerase domain of ORF904 from the archaeal plasmid pRN1

Lipps, G., Weinzierl, A.O., von Scheven, G., Buchen, C., Cramer, P.

(2004) Nat Struct Mol Biol 11: 157-162

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharolobus islandicus
Macromolecule	ORF904 (protein)
Unique Ligands	ZN

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1RO0 \| pdb_00001ro0	Download File View File

Bifunctional DNA primase/polymerase domain of ORF904 from the archaeal plasmid pRN1- Triple mutant F50M/L107M/L110M SeMet remote

Lipps, G., Weinzierl, A.O., von Scheven, G., Buchen, C., Cramer, P.

(2004) Nat Struct Mol Biol 11: 157-162

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharolobus islandicus
Macromolecule	ORF904 (protein)
Unique Ligands	ZN

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1RO2 \| pdb_00001ro2	Download File View File

Bifunctional DNA primase/polymerase domain of ORF904 from the archaeal plasmid pRN1- Triple mutant F50M/L107M/L110M manganese soak

Lipps, G., Weinzierl, A.O., von Scheven, G., Buchen, C., Cramer, P.

(2004) Nat Struct Mol Biol 11: 157-162

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharolobus islandicus
Macromolecule	hypothetical protein ORF904 (protein)
Unique Ligands	MN, ZN

1 to 25 of 916 Structures

Page 1 of 37

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1C4O | pdb_00001c4o

1EWI | pdb_00001ewi

1F08 | pdb_00001f08

1F2T | pdb_00001f2t

1F2U | pdb_00001f2u

1FGU | pdb_00001fgu

1G71 | pdb_00001g71

1II7 | pdb_00001ii7

1II8 | pdb_00001ii8

1IQP | pdb_00001iqp

1J0R | pdb_00001j0r

1L8D | pdb_00001l8d

1LTL | pdb_00001ltl

1NLF | pdb_00001nlf

1NO1 | pdb_00001no1

1NUI | pdb_00001nui

1OQY | pdb_00001oqy

1P98 | pdb_00001p98

1P9D | pdb_00001p9d

1QMP | pdb_00001qmp

1QZE | pdb_00001qze

1R9W | pdb_00001r9w

1RNI | pdb_00001rni

1RO0 | pdb_00001ro0

1RO2 | pdb_00001ro2