1Z2C

Crystal structure of mDIA1 GBD-FH3 in complex with RhoC-GMPPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 

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This is version 1.5 of the entry. See complete history


Literature

Structural and mechanistic insights into the interaction between Rho and mammalian Dia.

Rose, R.Weyand, M.Lammers, M.Ishizaki, T.Ahmadian, M.R.Wittinghofer, A.

(2005) Nature 435: 513-518

  • DOI: https://doi.org/10.1038/nature03604
  • Primary Citation of Related Structures:  
    1Z2C

  • PubMed Abstract: 

    Formins are involved in a variety of cellular processes that require the remodelling of the cytoskeleton. They contain formin homology domains FH1 and FH2, which initiate actin assembly. The Diaphanous-related formins form a subgroup that is characterized by an amino-terminal Rho GTPase-binding domain (GBD) and an FH3 domain, which bind somehow to the carboxy-terminal Diaphanous autoregulatory domain (DAD) to keep the protein in an inactive conformation. Upon binding of activated Rho proteins, the DAD is released and the ability of the formin to nucleate and elongate unbranched actin filaments is induced. Here we present the crystal structure of RhoC in complex with the regulatory N terminus of mammalian Diaphanous 1 (mDia1) containing the GBD/FH3 region, an all-helical structure with armadillo repeats. Rho uses its 'switch' regions for interacting with two subdomains of GBD/FH3. We show that the FH3 domain of mDia1 forms a stable dimer and we also identify the DAD-binding site. Although binding of Rho and DAD on the N-terminal fragment of mDia1 are mutually exclusive, their binding sites are only partially overlapping. On the basis of our results, we propose a structural model for the regulation of mDia1 by Rho and DAD.


  • Organizational Affiliation

    Max-Planck-Institute of Molecular Physiology, Department of Structural Biology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rho-related GTP-binding protein RhoC
A, C
193Homo sapiensMutation(s): 1 
Gene Names: RHOCARH9ARHC
UniProt & NIH Common Fund Data Resources
Find proteins for P08134 (Homo sapiens)
Explore P08134 
Go to UniProtKB:  P08134
PHAROS:  P08134
GTEx:  ENSG00000155366 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08134
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Diaphanous protein homolog 1
B, D
383Mus musculusMutation(s): 0 
Gene Names: Diaph1Diap1
UniProt & NIH Common Fund Data Resources
Find proteins for O08808 (Mus musculus)
Explore O08808 
Go to UniProtKB:  O08808
IMPC:  MGI:1194490
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO08808
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 148.64α = 90
b = 85.35β = 90
c = 123.38γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
ProDCdata collection
XDSdata scaling
SOLVEphasing
SHARPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-05-10
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Refinement description
  • Version 1.4: 2021-10-20
    Changes: Database references, Derived calculations
  • Version 1.5: 2024-02-14
    Changes: Data collection