4E8E | pdb_00004e8e

Structural characterization of Bombyx mori glutathione transferase BmGSTD1

• PDB DOI: https://doi.org/10.2210/pdb4E8E/pdb

• Classification: TRANSFERASE
• Organism(s): Bombyx mori
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-03-20 Released: 2013-04-24 
• Deposition Author(s): Tan, X., Ma, X.X., Hu, X.M., Chen, Q.M., Zhao, P., Xia, Q.Y., Zhou, C.Z.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.51 Å
• R-Value Free: 
  0.276 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.230 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.232 (Depositor) 

Starting Model: experimental

Literature

Structural characterization of Bombyx mori glutathione transferase BmGSTD1

Tan, X., Ma, X.X., Hu, X.M., Chen, Q.M., Zhao, P., Xia, Q.Y., Zhou, C.Z.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 101.48 kDa 
• Atom Count: 7,244 
• Modeled Residue Count: 864 
• Deposited Residue Count: 876 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase	A, B, C, D	219	Bombyx mori	Mutation(s): 0  EC: 2.5.1.18
UniProt
Find proteins for O61996 (Bombyx mori) Explore O61996  Go to UniProtKB:  O61996

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.51 Å
• R-Value Free:  0.276 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.230 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.232 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.783	α = 90
b = 88.756	β = 102.68
c = 86.488	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
AMoRE	phasing
REFMAC	refinement
HKL-2000	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-04-24 
Deposition Author(s): Tan, X., Ma, X.X., Hu, X.M., Chen, Q.M., Zhao, P., Xia, Q.Y., Zhou, C.Z.

Revision History  

• Version 1.0: 2013-04-24
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description