X-ray structure of uridine phosphorylase from Vibrio cholerae in complex with uridine at 1.03 A resolution
Prokofev, I.I., Lashkov, A.A., Gabdulkhakov, A.G., Dontsova, M.V., Betzel, C., Mikhailov, A.M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uridine phosphorylase | 253 | Vibrio cholerae | Mutation(s): 0  Gene Names:  udp, udp_1, B2J67_05455, B2J68_05210, B2J71_05165, BFX32_04820, BTY66_05555, CEF09_03900, DN30_1909, EN12_05055... EC: 2.4.2.3 | ||
UniProt | |||||
Find proteins for Q9K4U1 (Vibrio cholerae) Explore Q9K4U1  Go to UniProtKB:  Q9K4U1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9K4U1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
URI Query on URI | G [auth A] I [auth B] K [auth C] O [auth D] S [auth E] | URIDINE C9 H12 N2 O6 DRTQHJPVMGBUCF-XVFCMESISA-N | |||
EDO Query on EDO | U [auth E] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | J [auth B] L [auth C] M [auth C] P [auth D] Q [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | R [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
NA Query on NA | H [auth A], N [auth C], T [auth E] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 64.323 | α = 110.56 |
b = 72.039 | β = 107.53 |
c = 89.193 | γ = 85.83 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
MOLREP | phasing |
XSCALE | data reduction |
Funding Organization | Location | Grant Number |
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RFBR | Russian Federation | 14-04-00952a |
Grant of President of Russian Federation | Russian Federation | MK-9246.2016.3 |