Download MendeleyHigh resolution crystal structure of hemoglobin M Boston.
Nagatomo, S., Naoya, S., Ohki, M., Park, S.Y.To be published.
7DY4
High resolution crystal structure of hemoglobin M Boston.
- PDB DOI: https://doi.org/10.2210/pdb7DY4/pdb
- Classification: OXYGEN TRANSPORT
- Organism(s): Homo sapiens
- Mutation(s): Yes
- Deposited: 2021-01-20 Released: 2022-01-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.186
- R-Value Work: 0.166
- R-Value Observed: 0.167
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin subunit alpha | A, C, E, G | 141 | Homo sapiens | Mutation(s): 1 Gene Names: HBA1, HBA2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P69905 (Homo sapiens) Explore P69905 Go to UniProtKB: P69905 | |||||
PHAROS: P69905 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P69905 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin subunit beta | B, D, F, H | 146 | Homo sapiens | Mutation(s): 0 Gene Names: HBB |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P68871 (Homo sapiens) Explore P68871 Go to UniProtKB: P68871 | |||||
PHAROS: P68871 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P68871 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM (Subject of Investigation/LOI) Query on HEM | I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.186
- R-Value Work: 0.166
- R-Value Observed: 0.167
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.115 | α = 90 |
| b = 86.583 | β = 99.306 |
| c = 121.388 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| CrysalisPro | data reduction |
| Aimless | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2022-01-26 Deposition Author(s): Ohki, M., Park, S.-Y.
Revision History (Full details and data files)
- Version 1.0: 2022-01-26
Type: Initial release
