Download MendeleyCrystal structure of uPA in complex with cleaved camostat
Jiang, L.G., Huang, M.D.To be published.
7DZD
Crystal structure of uPA in complex with cleaved camostat
- PDB DOI: https://doi.org/10.2210/pdb7DZD/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Komagataella pastoris
- Mutation(s): Yes
- Deposited: 2021-01-25 Released: 2021-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.231
- R-Value Work: 0.192
- R-Value Observed: 0.194
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Urokinase-type plasminogen activator | A [auth U] | 245 | Homo sapiens | Mutation(s): 2 Gene Names: PLAU EC: 3.4.21.73 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00749 (Homo sapiens) Explore P00749 Go to UniProtKB: P00749 | |||||
PHAROS: P00749 GTEx: ENSG00000122861 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00749 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GBS (Subject of Investigation/LOI) Query on GBS | B [auth U] | 4-carbamimidamidobenzoic acid C8 H9 N3 O2 SXTSBZBQQRIYCU-UHFFFAOYSA-N |  | ||
| PGE Query on PGE | C [auth U], D [auth U] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.231
- R-Value Work: 0.192
- R-Value Observed: 0.194
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.317 | α = 90 |
| b = 120.317 | β = 90 |
| c = 42.451 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| APEX | data reduction |
| APEX | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2021-07-14 Deposition Author(s): Jiang, L.G., Huang, M.D.
Revision History (Full details and data files)
- Version 1.0: 2021-07-14
Type: Initial release - Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description
