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Gorel, A., Nass, K., Barends, T., Schlichting, I.To be published.
8A9E
Lysozyme, 9-11 fs FEL pulses as determined by XTCAV
- PDB DOI: https://doi.org/10.2210/pdb8A9E/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 2022-06-28 Released: 2023-07-12
- Funding Organization(s): Max Planck Society
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.67 Å
- R-Value Free: 0.240
- R-Value Work: 0.201
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme | A [auth AAA] | 129 | Gallus gallus | Mutation(s): 0 EC: 3.2.1.17 |  |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00698 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DO3 Query on DO3 | D [auth AAA], E [auth AAA] | 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID C17 H32 N4 O7 IQUHNCOJRJBMSU-CQSZACIVSA-N |  | ||
| GD Query on GD | B [auth AAA], C [auth AAA] | GADOLINIUM ATOM Gd UIWYJDYFSGRHKR-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.67 Å
- R-Value Free: 0.240
- R-Value Work: 0.201
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.75 | α = 90 |
| b = 77.75 | β = 90 |
| c = 38.9 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrystFEL | data reduction |
| CrystFEL | data scaling |
| REFMAC | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-07-12 Deposition Author(s): Barends, T., Nass, K., Gorel, A., Schlichting, I.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Max Planck Society | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-07-12
Type: Initial release - Version 1.1: 2024-02-07
Changes: Data collection, Refinement description - Version 1.2: 2024-11-13
Changes: Structure summary
