Structural insights into the initiation of free radical formation in the Class Ib ribonucleotide reductases in Mycobacteria
Yadav, L.R., Sharma, V., Shanmugam, M., Mande, S.C.(2024) Curr Res Struct Biol 8: 100157
Experimental Data Snapshot
Starting Model: experimental
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(2024) Curr Res Struct Biol 8: 100157
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein NrdI | A [auth C] | 149 | Mycolicibacterium thermoresistibile ATCC 19527 | Mutation(s): 0  Gene Names: nrdI | |
UniProt | |||||
Find proteins for G7CEK1 (Mycolicibacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316)) Explore G7CEK1  Go to UniProtKB:  G7CEK1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G7CEK1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FMN (Subject of Investigation/LOI) Query on FMN | B [auth C] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N | |||
SO3 Query on SO3 | C | SULFITE ION O3 S LSNNMFCWUKXFEE-UHFFFAOYSA-L | |||
CL Query on CL | F [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
PEO Query on PEO | D [auth C] | HYDROGEN PEROXIDE H2 O2 MHAJPDPJQMAIIY-UHFFFAOYSA-N | |||
PER Query on PER | E [auth C] | PEROXIDE ION O2 ANAIPYUSIMHBEL-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 35.737 | α = 90 |
b = 36.84 | β = 111.53 |
c = 48.371 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
iMOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
REFMAC | refinement |
Funding Organization | Location | Grant Number |
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Department of Science & Technology (DST, India) | India | DST-NPDF (PDF/2015/000961) and DBT-Centre of Excellence Grant (BT/PR15450/COE/34/46/2016). |