9FBG

SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant P151S

PDB DOI: https://doi.org/10.2210/pdb9FBG/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe acute respiratory syndrome coronavirus 2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2024-05-13 Released: 2024-11-20
Deposition Author(s): Dhamotharan, K., Schlundt, A.
Funding Organization(s): German Research Foundation (DFG), Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.54 Å
R-Value Free: 0.261
R-Value Work: 0.221
R-Value Observed: 0.223

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of N-terminal domain mutant P151S of nucleocapsid protein of SARS-CoV-2

Dhamotharan, K., Schlundt, A., Guenther, S.

To be published.

Macromolecule Content

Total Structure Weight: 267.92 kDa
Atom Count: 19,632
Modelled Residue Count: 2,381
Deposited Residue Count: 2,448
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoprotein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	136	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 1
UniProt
Find proteins for P0DTC9 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC9 Go to UniProtKB: P0DTC9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0DTC9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.54 Å
R-Value Free: 0.261
R-Value Work: 0.221
R-Value Observed: 0.223
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 188.111	α = 90
b = 108.883	β = 100.79
c = 146.272	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
REFMAC	refinement
PDB-REDO	refinement
Coot	model building
BUCCANEER	model building
Aimless	data scaling
pointless	data scaling
STARANISO	data scaling
autoPROC	data reduction
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-20

Deposition Author(s):

Dhamotharan, K.

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SCHL2062/2-1 and 2-2
German Research Foundation (DFG)	Germany	161793742
Other government		Goethe-Corona-Funds
Other government		Johanna Quandt Young Academy at Goethe (stipend number 2019/AS01)

Revision History (Full details and data files)

Version 1.0: 2024-11-20
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.