9G9X | pdb_00009g9x

Structure of the human two pore domain potassium ion channel TASK-1 (K2P3.1)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structures of TASK-1 and TASK-3 K2P channels provide insight into their gating and dysfunction in disease.

Hall, P.R.Jouen-Tachoire, T.Schewe, M.Proks, P.Baukrowitz, T.Carpenter, E.P.Newstead, S.Rodstrom, K.E.J.Tucker, S.J.

(2025) Structure 33: 115

  • DOI: https://doi.org/10.1016/j.str.2024.11.005
  • Primary Citation of Related Structures:  
    9G9V, 9G9W, 9G9X

  • PubMed Abstract: 

    TASK-1 and TASK-3 are pH-sensitive two-pore domain (K2P/KCNK) K + channels. Their functional roles make them promising targets for treatment of multiple disorders including sleep apnea, pain, and atrial fibrillation. Mutations in these channels are also associated with neurodevelopmental and hypertensive disorders. A previous crystal structure of TASK-1 revealed a lower "X-gate" as a hotspot for missense gain-of-function (GoF) mutations associated with DDSA (developmental delay with sleep apnea). However, the mechanisms of gating in TASK channels are still not fully understood. Here, we resolve structures for both human TASK-1 and TASK-3 by cryoelectron microscopy (cryo-EM), as well as a recurrent TASK-3 variant (G236R) associated with KCNK9 imprinting syndrome (KIS) (formerly known as Birk-Barel syndrome). Combined with functional studies of the X-gating mechanism, we provide evidence for how a highly conserved gating mechanism becomes defective in disease, and also provide further insight into the pathway of conformational changes that underlie the pH-dependent inhibition of TASK channel activity.


  • Organizational Affiliation

    Department of Biochemistry, University of Oxford, Oxford, UK; Clarendon Laboratory, Department of Physics, University of Oxford, Oxford, UK; Scripps Institute, San Diego, CA, USA; Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium channel subfamily K member 3
A, B
264Homo sapiensMutation(s): 0 
Gene Names: KCNK3TASKTASK1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O14649 (Homo sapiens)
Explore O14649 
Go to UniProtKB:  O14649
PHAROS:  O14649
GTEx:  ENSG00000171303 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14649
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.4.1
MODEL REFINEMENTPHENIX1.20.1-4487

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T002018/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S008608/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/W017741/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-18
    Type: Initial release
  • Version 1.1: 2025-01-15
    Changes: Data collection, Database references