1STM | pdb_00001stm

SATELLITE PANICUM MOSAIC VIRUS

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1stma_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Satellite viruses Satellite viruses SPMV coat protein (Panicum mosaic satellite virus ) [TaxId: 154834 ], SCOPe (2.08)
Bd1stmb_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Satellite viruses Satellite viruses SPMV coat protein (Panicum mosaic satellite virus ) [TaxId: 154834 ], SCOPe (2.08)
Cd1stmc_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Satellite viruses Satellite viruses SPMV coat protein (Panicum mosaic satellite virus ) [TaxId: 154834 ], SCOPe (2.08)
Dd1stmd_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Satellite viruses Satellite viruses SPMV coat protein (Panicum mosaic satellite virus ) [TaxId: 154834 ], SCOPe (2.08)
Ed1stme_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Satellite viruses Satellite viruses SPMV coat protein (Panicum mosaic satellite virus ) [TaxId: 154834 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 Familysatellite viruses 8028397 4003489 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySatellite viruses 8040776 3000942 SCOP2 (2022-06-29)
BSCOP2B SuperfamilySatellite viruses 8040776 3000942 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySatellite viruses 8040776 3000942 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySatellite viruses 8040776 3000942 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySatellite viruses 8040776 3000942 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APotex_coate1stmA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Potex_coatECOD (1.6)
BPotex_coate1stmB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Potex_coatECOD (1.6)
CPotex_coate1stmC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Potex_coatECOD (1.6)
DPotex_coate1stmD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Potex_coatECOD (1.6)
EPotex_coate1stmE1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Potex_coatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.220 Mainly Beta Sandwich Jelly Rolls Satellite virus coat domainCATH (4.3.0)
B2.60.120.220 Mainly Beta Sandwich Jelly Rolls Satellite virus coat domainCATH (4.3.0)
C2.60.120.220 Mainly Beta Sandwich Jelly Rolls Satellite virus coat domainCATH (4.3.0)
D2.60.120.220 Mainly Beta Sandwich Jelly Rolls Satellite virus coat domainCATH (4.3.0)
E2.60.120.220 Mainly Beta Sandwich Jelly Rolls Satellite virus coat domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
SATELLITE PANICUM MOSAIC VIRUS -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR037164Satellite virus coat domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR010392Satellite virus coatFamily