1TLJ

Crystal Structure of Conserved Protein of Unknown Function SSO0622 from Sulfolobus solfataricus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1tlja_	Alpha and beta proteins (a+b)	SSo0622-like	SSo0622-like	SSo0622-like	Hypothetical protein SSo0622	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)
B	d1tljb_	Alpha and beta proteins (a+b)	SSo0622-like	SSo0622-like	SSo0622-like	Hypothetical protein SSo0622	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	SSo0622-like	8027912	4002910	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SSo0622-like	8040291	3001884	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	SSo0622-like	8040291	3001884	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TYW3	e1tljA1	A: a+b two layers	X: SSo0622-like (Pfam 02676) (From Topology)	H: SSo0622-like (Pfam 02676) (From Topology)	T: SSo0622-like (Pfam 02676)	F: TYW3	ECOD (1.6)
B	TYW3	e1tljB1	A: a+b two layers	X: SSo0622-like (Pfam 02676) (From Topology)	H: SSo0622-like (Pfam 02676) (From Topology)	T: SSo0622-like (Pfam 02676)	F: TYW3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1960.10	Alpha Beta	2-Layer Sandwich	SSo0622-like fold	tRNA wybutosine-synthesizing-like	CATH (4.3.0)
B	3.30.1960.10	Alpha Beta	2-Layer Sandwich	SSo0622-like fold	tRNA wybutosine-synthesizing-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02676	Methyltransferase TYW3 (TYW3)	Methyltransferase TYW3	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hypothetical UPF0130 protein SSO0622	tRNA methyltransferase activity RNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity methyltransferase activity catalytic activity	glycosyl compound metabolic process wybutosine metabolic process carbohydrate derivative metabolic process RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process tRNA processing RNA processing carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process wybutosine biosynthetic process tRNA modification primary metabolic process glycosyl compound metabolic process wybutosine metabolic process carbohydrate derivative metabolic process RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process tRNA processing RNA processing carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process wybutosine biosynthetic process tRNA modification primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process RNA modification biosynthetic process macromolecule modification metabolic process cellular process macromolecule metabolic process macromolecule methylation methylation RNA methylation tRNA methylation	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR022908	tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase	Family
A, B	IPR003827	tRNA wybutosine-synthesizing protein	Domain
A, B	IPR036602	tRNA wybutosine-synthesizing-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.