1U0U

An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization Specificity of Type III Polyketide Synthases: Pine stilbene synthase structure

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1u0ua2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, C-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
A	d1u0ua1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, N-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
B	d1u0ub2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, C-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
B	d1u0ub1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, N-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
C	d1u0uc2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, C-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
C	d1u0uc1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, N-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
D	d1u0ud2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, C-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
D	d1u0ud1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, N-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
E	d1u0ue2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, C-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
E	d1u0ue1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, N-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
F	d1u0uf2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, C-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)
F	d1u0uf1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Chalcone synthase-like	Dihydropinosylvin synthase, N-terminal domain	Scots pine (Pinus sylvestris ) [TaxId: 3349 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Chalcone synthase-like	8030376	4000864	SCOP2 (2022-06-29)
A	SCOP2 Family	Chalcone synthase-like	8030378	4000864	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thiolase-like	8042755	3000122	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thiolase-like	8042757	3000122	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Thiolase-like	8042757	3000122	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thiolase-like	8042755	3000122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thiolase-like	8042755	3000122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thiolase-like	8042757	3000122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thiolase-like	8042755	3000122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thiolase-like	8042757	3000122	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thiolase-like	8042757	3000122	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thiolase-like	8042755	3000122	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thiolase-like	8042757	3000122	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thiolase-like	8042755	3000122	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ACP_syn_III_C	e1u0uA2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
A	Chal_sti_synt_N	e1u0uA1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
B	ACP_syn_III_C	e1u0uB2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
B	Chal_sti_synt_N	e1u0uB1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
C	ACP_syn_III_C	e1u0uC2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
C	Chal_sti_synt_N	e1u0uC1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
D	ACP_syn_III_C	e1u0uD2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
D	Chal_sti_synt_N	e1u0uD1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
E	ACP_syn_III_C	e1u0uE2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
E	Chal_sti_synt_N	e1u0uE1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
F	ACP_syn_III_C	e1u0uF2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
F	Chal_sti_synt_N	e1u0uF1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
B	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
C	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
D	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
E	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
F	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00195	Chalcone and stilbene synthases, N-terminal domain (Chal_sti_synt_N)	Chalcone and stilbene synthases, N-terminal domain	The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.	Domain
A, B, C, D, E A, B, C, D, E, F	PF02797	Chalcone and stilbene synthases, C-terminal domain (Chal_sti_synt_C)	Chalcone and stilbene synthases, C-terminal domain	This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Dihydropinosylvin synthase	acyltransferase activity pinosylvin synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity	polyketide biosynthetic process secondary metabolite biosynthetic process biosynthetic process polyketide metabolic process metabolic process secondary metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR001099	Chalcone/stilbene synthase, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR016039	Thiolase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR012328	Chalcone/stilbene synthase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR011141	Polyketide synthase, type III	Family
A, B, C, D, E A, B, C, D, E, F	IPR018088	Chalcone/stilbene synthase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.