2JNA | pdb_00002jna

Solution NMR Structure of Salmonella typhimurium LT2 Secreted Protein STM0082: Northeast Structural Genomics Consortium Target StR109

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2jnaa1	Alpha and beta proteins (a+b)	Dodecin subunit-like	YdgH-like	YdgH-like	Hypothetical protein STM0082	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
A	d2jnaa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d2jnab2	Alpha and beta proteins (a+b)	Dodecin subunit-like	YdgH-like	YdgH-like	Hypothetical protein STM0082	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d2jnab3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YdgH-like	8022322	4002578	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YdgH-like	8034702	3001436	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YdgH-like	8034702	3001436	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1471	e2jnaA1	A: a+b two layers	X: Dodecin subunit-like	H: YdgH-like (From Topology)	T: YdgH-like	F: DUF1471	ECOD (1.6)
B	DUF1471	e2jnaB1	A: a+b two layers	X: Dodecin subunit-like	H: YdgH-like (From Topology)	T: YdgH-like	F: DUF1471	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
B	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07338	YdgH/BhsA/McbA-like domain (YdgH_BhsA-like)	YdgH/BhsA/McbA-like domain	This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis [1,2]. BhsA (also known as ComC) reduces t ...	This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis [1,2]. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction [3]. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction [2].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051096	BhsA/McbA stress and biofilm-associated protein	Family
A, B	IPR036275	YdgH-like superfamily	Homologous Superfamily
A, B	IPR025543	Dodecin-like	Homologous Superfamily
A, B	IPR010854	YdgH/BhsA/McbA-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.