5EJS | pdb_00005ejs

Structure of Dictyostelium Discoideum Myosin VII MyTH4-FERM MF2 domain, mutant 1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ubiquitin-like	8091857	3000157	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PH domain-like	8091859	3000134	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	FERM central domain-like	8091858	3001227	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MyTH4 domain-like	8091855	3002546	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FERM central domain-like	8091858	3001227	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MyTH4 domain-like	8091855	3002546	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ubiquitin-like	8091857	3000157	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8091859	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IRS_1	e5ejsA4	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
A	B41_C_1	e5ejsA2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: B41_C_1	ECOD (1.6)
A	MyTH4	e5ejsA3	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: MyTH4	ECOD (1.6)
A	RA_2	e5ejsA1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: RA_2	ECOD (1.6)
B	IRS_1	e5ejsB2	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
B	B41_C_1	e5ejsB4	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: B41_C_1	ECOD (1.6)
B	MyTH4	e5ejsB3	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: MyTH4	ECOD (1.6)
B	RA_2	e5ejsB1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: RA_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.530	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	MyTH4 domain	CATH (utative)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (utative)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (utative)
B	1.25.40.530	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	MyTH4 domain	CATH (utative)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (utative)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02174	PTB domain (IRS-1 type) (IRS)	PTB domain (IRS-1 type)		Domain
A, B	PF21989	RA like domain (RA_2)	RA like domain		Domain
A, B	PF22406	DdMyo7 FERM domain (DdMyo7_FERM)	DdMyo7 FERM domain	This entry represents the C-terminal FERM domain found in Myo7 from Dictyostelium discoideum [1], a protein that is essential for the extension of filopodia, plasma membrane protrusions filled with parallel bundles of F-actin similarly as metazoan My ...	This entry represents the C-terminal FERM domain found in Myo7 from Dictyostelium discoideum [1], a protein that is essential for the extension of filopodia, plasma membrane protrusions filled with parallel bundles of F-actin similarly as metazoan Myo10, which suggests a high degree of functional conservation throughout evolution.	Domain
A, B	PF00784	MyTH4 domain (MyTH4)	MyTH4 domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Myosin-I heavy chain	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding microtubule binding tubulin binding polypeptide conformation or assembly isomerase activity isomerase activity microfilament motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport developmental process anatomical structure morphogenesis anatomical structure development cell morphogenesis cellular component organization cellular component biogenesis localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport developmental process anatomical structure morphogenesis anatomical structure development cell morphogenesis cellular component organization cellular component biogenesis filopodium assembly cellular component assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component organization or biogenesis cell projection assembly cellular developmental process spore germination cell adhesion cell-substrate adhesion organelle organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization actin filament-based movement	cellular anatomical structure membrane cell periphery cell cortex intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytosol filopodium tip cellular anatomical structure membrane cell periphery cell cortex intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytosol filopodium tip cell projection actin-based cell projection filopodium plasma membrane bounded cell projection cell leading edge protein-containing complex myosin complex phagocytic cup plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B	IPR000299	FERM domain	Domain
A, B	IPR001609	Myosin head, motor domain-like	Domain
A, B	IPR002404	IRS-type PTB domain	Domain
A, B	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A, B	IPR019748	FERM central domain	Domain
A, B	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B	IPR000048	IQ motif, EF-hand binding site	Binding Site
A, B	IPR038185	MyTH4 domain superfamily	Homologous Superfamily
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR019749	Band 4.1 domain	Domain
A, B	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A, B	IPR051724	Actin-based Motor Myosin	Family
A, B	IPR000857	MyTH4 domain	Domain
A, B	IPR055159	DdMyo7, FERM domain	Domain
A, B	IPR001452	SH3 domain	Domain
A, B	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.