5EY0
Crystal structure of CodY from Staphylococcus aureus with GTP and Ile
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | HTH_CodY | e5ey0B2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_CodY | ECOD (1.6) |
A [auth B] | CodY | e5ey0B1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: CodY | ECOD (1.6) |
B [auth A] | HTH_CodY | e5ey0A2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_CodY | ECOD (1.6) |
B [auth A] | CodY | e5ey0A1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: CodY | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF08222 | CodY helix-turn-helix domain (HTH_CodY) | CodY helix-turn-helix domain | This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nut ... | Domain |
A [auth B], B [auth A] | PF06018 | CodY GAF-like domain (CodY) | CodY GAF-like domain | This domain is a GAF-like domain found at the N-terminus of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. This domain is involved in GTP binding and also branched chain amino acids (Matilla et. al., FEMS Microbiol ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR010312 | Global transcriptional regulator CodY, N-terminal | Domain |
A [auth B], B [auth A] | IPR029016 | GAF-like domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR013198 | Global transcriptional regulator CodY, C-terminal | Domain |
A [auth B], B [auth A] | IPR014154 | Global transcriptional regulator CodY | Family |
A [auth B], B [auth A] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |