5JVR | pdb_00005jvr

The neck-linker of Mus musculus KIF3A fused to the alpha 7 helix of Drosophila melanogaster Kinesin-1 fused to EB1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5jvra_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5jvrb_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d5jvrc_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d5jvrd_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d5jvre_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d5jvrf1	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d5jvrf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d5jvrg_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d5jvrh_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EB1_1	e5jvrA1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)
B	EB1_1	e5jvrB1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)
C	EB1_1	e5jvrC1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)
D	EB1_1	e5jvrD1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)
E	EB1_1	e5jvrE1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)
F	EB1_1	e5jvrF1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)
G	EB1_1	e5jvrG1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)
H	EB1_1	e5jvrH1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
C	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
D	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
E	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
F	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
G	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
H	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF03271	EB1-like C-terminal motif (EB1)	EB1-like C-terminal motif	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Chimera protein of mouse KIF3A,fruit fly Kinesin-1 and human EB1	cytoskeletal protein binding spectrin binding protein-containing complex binding protein binding binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity adenyl ribonucleotide binding nucleotide binding cytoskeletal protein binding spectrin binding protein-containing complex binding protein binding binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding microtubule binding tubulin binding intraciliary transport particle B binding tropomyosin binding plus-end-directed microtubule motor activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides RNA binding nucleic acid binding kinase binding enzyme binding protein kinase binding cell adhesion molecule binding cadherin binding microtubule plus-end binding identical protein binding	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation smoothened signaling pathway cell communication cellular process signal transduction organelle assembly plasma membrane bounded cell projection organization motile cilium assembly cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly cell population proliferation positive regulation of cell population proliferation positive regulation of keratinocyte proliferation positive regulation of epithelial cell proliferation regulation of keratinocyte proliferation positive regulation of biological process regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation positive regulation of cellular process keratinocyte proliferation dorsal/ventral pattern formation pattern specification process regionalization epidermis development tissue development epidermal stem cell homeostasis multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development non-motile cilium assembly determination of bilateral symmetry determination of left/right symmetry left/right pattern formation specification of symmetry microtubule-based movement microtubule-based process cilium movement head development forebrain development brain development nervous system development central nervous system development neural precursor cell proliferation inner ear receptor cell development cellular developmental process sensory organ development cell development neuron projection development neurogenesis neuron differentiation cell differentiation inner ear development mechanoreceptor differentiation ear development inner ear receptor cell differentiation generation of neurons neuron development inner ear receptor cell stereocilium organization anterograde dendritic transport cellular localization transport intracellular transport dendritic transport establishment of localization localization axo-dendritic transport establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport dentate gyrus development pallium development telencephalon development hippocampus development limbic system development epithelium development neural tube development tube development dorsal/ventral neural tube patterning neural tube patterning microtubule organizing center organization microtubule cytoskeleton organization centriole-centriole cohesion centrosome cycle cell cycle cytoskeleton organization cell cycle process kidney development renal system development anterior/posterior pattern specification microtubule anchoring at microtubule organizing center microtubule anchoring at centrosome microtubule anchoring anterograde dendritic transport of neurotransmitter receptor complex protein-containing complex localization receptor localization to synapse heart morphogenesis embryonic heart tube development tube morphogenesis embryonic heart tube morphogenesis heart looping animal organ morphogenesis epithelial tube morphogenesis embryonic organ development embryonic organ morphogenesis embryonic morphogenesis morphogenesis of an epithelium determination of heart left/right asymmetry anatomical structure morphogenesis tissue morphogenesis centrosome separation mitochondrion distribution mitochondrion localization organelle localization intracellular distribution of mitochondria cellular component disassembly protein-containing complex organization protein-containing complex disassembly protein-RNA complex disassembly protein-RNA complex organization organelle disassembly stress granule disassembly establishment of organelle localization nucleus localization nuclear migration vesicle localization establishment of vesicle localization synaptic vesicle localization synaptic vesicle transport blastoderm segmentation sexual reproduction reproductive process anterior/posterior axis specification, embryo segmentation cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation gamete generation oocyte development tripartite regional subdivision embryonic axis specification anterior/posterior axis specification cell maturation embryonic pattern specification oocyte axis specification oocyte construction multicellular organismal reproductive process oogenesis oocyte anterior/posterior axis specification cytoplasm organization developmental maturation pole plasm assembly anatomical structure maturation maternal determination of anterior/posterior axis, embryo germ cell development oocyte differentiation axis specification protein polymerization microtubule polymerization microtubule polymerization or depolymerization protein-containing complex assembly supramolecular fiber organization plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis dendrite development dendrite morphogenesis cell morphogenesis involved in neuron differentiation actin filament bundle organization actin cytoskeleton organization actin filament organization actin filament-based process muscle structure development somatic muscle development larval somatic muscle development larval development post-embryonic development ovarian nurse cell to oocyte transport pole plasm oskar mRNA localization cellular macromolecule localization RNA localization pole plasm mRNA localization pole plasm RNA localization intracellular mRNA localization involved in anterior/posterior axis specification intracellular mRNA localization intracellular mRNA localization involved in pattern specification process macromolecule localization axonogenesis axon development organelle transport along microtubule mitochondrion transport along microtubule axonal transport of mitochondrion anterograde axonal transport establishment of mitochondrion localization anterograde axonal transport of mitochondrion axonal transport establishment of mitochondrion localization, microtubule-mediated behavior locomotory behavior larval behavior larval locomotory behavior cellular component assembly involved in morphogenesis egg chorion assembly cellular anatomical entity morphogenesis anatomical structure formation involved in morphogenesis dorsal appendage formation external encapsulating structure organization axon guidance neuron projection guidance photoreceptor cell differentiation visual system development eye morphogenesis eye photoreceptor cell differentiation sensory system development eye development sensory organ morphogenesis microtubule sliding establishment or maintenance of cell polarity establishment or maintenance of microtubule cytoskeleton polarity establishment or maintenance of cytoskeleton polarity oocyte microtubule cytoskeleton polarization oocyte microtubule cytoskeleton organization regulation of localization regulation of intracellular mRNA localization regulation of pole plasm oskar mRNA localization regulation of cellular localization oocyte dorsal/ventral axis specification dorsal/ventral axis specification microtubule bundle formation protein localization protein localization to microtubule cytoskeleton protein localization to microtubule organizing center protein localization to cytoskeleton protein localization to organelle protein localization to centrosome regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization negative regulation of biological process regulation of protein-containing complex assembly negative regulation of cellular process negative regulation of protein polymerization negative regulation of supramolecular fiber organization negative regulation of cellular component organization negative regulation of microtubule polymerization or depolymerization negative regulation of cytoskeleton organization regulation of microtubule-based process negative regulation of microtubule polymerization regulation of cellular component biogenesis regulation of organelle organization negative regulation of protein-containing complex assembly negative regulation of organelle organization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization regulation of microtubule cytoskeleton organization mitotic metaphase chromosome alignment mitotic cell cycle metaphase chromosome alignment chromosome localization mitotic sister chromatid segregation chromosome segregation mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation nuclear division mitotic cell cycle process nuclear chromosome segregation establishment of chromosome localization cell division cell migration cell motility membraneless organelle assembly spindle assembly spindle organization protein localization to astral microtubule protein localization to microtubule protein localization to cytoplasmic microtubule protein localization to spindle microtubule protein localization to mitotic spindle spindle localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation microtubule cytoskeleton organization involved in mitosis establishment of cell polarity establishment of mitotic spindle orientation positive regulation of organelle organization positive regulation of cellular component organization positive regulation of protein-containing complex assembly positive regulation of protein polymerization positive regulation of microtubule polymerization or depolymerization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization positive regulation of microtubule polymerization	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection ciliary transition zone non-motile cilium 9+0 non-motile cilium neuron projection photoreceptor cell cilium photoreceptor connecting cilium intracellular organelle microtubule organizing center membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection ciliary transition zone non-motile cilium 9+0 non-motile cilium neuron projection photoreceptor cell cilium photoreceptor connecting cilium intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol motile cilium synapse cell junction glutamatergic synapse neuron projection cytoplasm cytoplasmic region plasma membrane bounded cell projection cytoplasm dendrite cytoplasm somatodendritic compartment dendrite dendritic tree protein-containing complex microtubule associated complex kinesin II complex kinesin complex postsynapse polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule end microtubule plus-end cell cortex cortical cytoskeleton actin cytoskeleton cell periphery actin cap cortical actin cytoskeleton axon axon cytoplasm anchoring junction focal adhesion cell-substrate junction spindle spindle midzone centrosome mitotic spindle aster spindle microtubule cytoplasmic microtubule mitotic spindle astral microtubule end mitotic spindle astral microtubule astral microtubule membrane plasma membrane plasma membrane region cell projection membrane Golgi apparatus intracellular membrane-bounded organelle endomembrane system cortical microtubule cytoskeleton mitotic spindle pole spindle pole ciliary basal body mitotic spindle microtubule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001752	Kinesin motor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027640	Kinesin-like protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019821	Kinesin motor domain, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001752	Kinesin motor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027640	Kinesin-like protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019821	Kinesin motor domain, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001715	Calponin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR004953	EB1, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027328	Microtubule-associated protein RP/EB	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036133	EB1, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036872	CH domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: Q15691	Weight Gain primitive neuroectodermal tumor astrocytic tumor coronary artery disease inflammatory bowel disease lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma plasma cell myeloma atypical teratoid rhabdoid tumor dermatomyositis juvenile dermatomyositis malignant ependymoma myocardial ischemia osteosarcoma Weight Gain primitive neuroectodermal tumor astrocytic tumor coronary artery disease inflammatory bowel disease lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma plasma cell myeloma atypical teratoid rhabdoid tumor dermatomyositis juvenile dermatomyositis malignant ependymoma myocardial ischemia osteosarcoma polycystic ovary syndrome breast carcinoma glioblastoma large cell medulloblastoma malignant glioma nicotine dependence ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.