Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5n9za2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
Ad5n9za1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
C [auth H]d5n9zh2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
C [auth H]d5n9zh1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
E [auth F]d5n9zf2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
E [auth F]d5n9zf1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
G [auth D]d5n9zd2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
G [auth D]d5n9zd1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
I [auth B]d5n9zb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
I [auth B]d5n9zb1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
K [auth C]d5n9zc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
K [auth C]d5n9zc1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
M [auth E]d5n9ze2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
M [auth E]d5n9ze1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
O [auth G]d5n9zg2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
O [auth G]d5n9zg1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
B [auth I]d5n9zi_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
D [auth O]d5n9zo_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
F [auth N]d5n9zn_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
J [auth P]d5n9zp_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
L [auth J]d5n9zj_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
P [auth L]d5n9zl_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
H [auth M]d5n9zm_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
N [auth K]d5n9zk_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth I]SCOP2B SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2B (2022-06-29)
D [auth O]SCOP2 FamilyRuBisCO, small subunit 8094980 4001455 SCOP2 (2022-06-29)
D [auth O]SCOP2 SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2 (2022-06-29)
F [auth N]SCOP2B SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2B (2022-06-29)
J [auth P]SCOP2B SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2B (2022-06-29)
H [auth M]SCOP2B SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2B (2022-06-29)
N [auth K]SCOP2B SuperfamilyRuBisCO, small subunit 8094981 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARuBisCO_large_Ne5n9zA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee5n9zA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
C [auth H]RuBisCO_large_Ne5n9zH2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
C [auth H]RuBisCO_largee5n9zH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
E [auth F]RuBisCO_large_Ne5n9zF2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
E [auth F]RuBisCO_largee5n9zF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
G [auth D]RuBisCO_large_Ne5n9zD1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
G [auth D]RuBisCO_largee5n9zD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
I [auth B]RuBisCO_large_Ne5n9zB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
I [auth B]RuBisCO_largee5n9zB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
K [auth C]RuBisCO_large_Ne5n9zC2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
K [auth C]RuBisCO_largee5n9zC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
M [auth E]RuBisCO_large_Ne5n9zE2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
M [auth E]RuBisCO_largee5n9zE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
O [auth G]RuBisCO_large_Ne5n9zG1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
O [auth G]RuBisCO_largee5n9zG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
B [auth I]RuBisCO_smalle5n9zI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
D [auth O]RuBisCO_smalle5n9zO1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
F [auth N]RuBisCO_smalle5n9zN1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
J [auth P]RuBisCO_smalle5n9zP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
L [auth J]RuBisCO_smalle5n9zJ1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
P [auth L]RuBisCO_smalle5n9zL1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
H [auth M]RuBisCO_smalle5n9zM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
N [auth K]RuBisCO_smalle5n9zK1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C [auth H]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C [auth H]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E [auth F]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E [auth F]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G [auth D]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G [auth D]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
I [auth B]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
I [auth B]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
K [auth C]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
K [auth C]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
M [auth E]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
M [auth E]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
O [auth G]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
O [auth G]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
B [auth I]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
D [auth O]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
F [auth N]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
J [auth P]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L [auth J]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P [auth L]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
H [auth M]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N [auth K]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ribulose bisphosphate carboxylase large chain
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
8RE Parent Component: LYS

CSO Parent Component: CYS

RESIDAA0205

PSI-MOD :  L-cysteine sulfenic acid MOD:00210
HLU Parent Component: LEU

RESIDAA0205

HYP Parent Component: PRO

RESIDAA0205 , AA0030

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039
KCX Parent Component: LYS

RESIDAA0205 , AA0030

LYO Parent Component: LYS

RESIDAA0205 , AA0030

M3L Parent Component: LYS

RESIDAA0205 , AA0030 , AA0074

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083