5YU0
Structural basis for recognition of L-lysine, L-ornithine, and L-2,4-diamino butyric acid by lysine cyclodeaminase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5yu0a_ | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | automated matches | automated matches | (Streptomyces pristinaespiralis ) [TaxId: 38300 ], | SCOPe (2.08) |
D | d5yu0d_ | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | automated matches | automated matches | (Streptomyces pristinaespiralis ) [TaxId: 38300 ], | SCOPe (2.08) |
B | d5yu0b_ | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | automated matches | automated matches | (Streptomyces pristinaespiralis ) [TaxId: 38300 ], | SCOPe (2.08) |
C | d5yu0c_ | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | automated matches | automated matches | (Streptomyces pristinaespiralis ) [TaxId: 38300 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ornithine cyclodeaminase-like | 8063737 | 4000025 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ornithine cyclodeaminase-like | 8063738 | 3000041 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Ornithine cyclodeaminase-like | 8063738 | 3000041 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ornithine cyclodeaminase-like | 8063738 | 3000041 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ornithine cyclodeaminase-like | 8063738 | 3000041 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OCD_Mu_crystall_N | e5yu0A1 | A: a+b two layers | X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | T: Ornithine cyclodeaminase-like enzymes dimerization domain | F: OCD_Mu_crystall_N | ECOD (1.6) |
A | OCD_Mu_crystall_C | e5yu0A2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: OCD_Mu_crystall_C | ECOD (1.6) |
D | OCD_Mu_crystall_N | e5yu0D1 | A: a+b two layers | X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | T: Ornithine cyclodeaminase-like enzymes dimerization domain | F: OCD_Mu_crystall_N | ECOD (1.6) |
D | OCD_Mu_crystall_C | e5yu0D2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: OCD_Mu_crystall_C | ECOD (1.6) |
B | OCD_Mu_crystall_N | e5yu0B1 | A: a+b two layers | X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | T: Ornithine cyclodeaminase-like enzymes dimerization domain | F: OCD_Mu_crystall_N | ECOD (1.6) |
B | OCD_Mu_crystall_C | e5yu0B2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: OCD_Mu_crystall_C | ECOD (1.6) |
C | OCD_Mu_crystall_N | e5yu0C2 | A: a+b two layers | X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | T: Ornithine cyclodeaminase-like enzymes dimerization domain | F: OCD_Mu_crystall_N | ECOD (1.6) |
C | OCD_Mu_crystall_C | e5yu0C1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: OCD_Mu_crystall_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Lysine cyclodeaminase | - |