5ZMD
Crystal structure of FTO in complex with m6dA modified ssDNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FTO_NTD | e5zmdA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: FTO_NTD | ECOD (1.6) |
A | FTO_CTD | e5zmdA2 | A: alpha bundles | X: STAT-like | H: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain (From Topology) | T: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain | F: FTO_CTD | ECOD (1.6) |
E | FTO_NTD | e5zmdE2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: FTO_NTD | ECOD (1.6) |
E | FTO_CTD | e5zmdE3 | A: alpha bundles | X: STAT-like | H: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain (From Topology) | T: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain | F: FTO_CTD | ECOD (1.6) |
C | FTO_NTD | e5zmdC1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: FTO_NTD | ECOD (1.6) |
C | FTO_CTD | e5zmdC2 | A: alpha bundles | X: STAT-like | H: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain (From Topology) | T: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain | F: FTO_CTD | ECOD (1.6) |
G | FTO_NTD | e5zmdG1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: FTO_NTD | ECOD (1.6) |
G | FTO_CTD | e5zmdG2 | A: alpha bundles | X: STAT-like | H: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain (From Topology) | T: Alpha-ketoglutarate-dependent dioxygenase FTO helical domain | F: FTO_CTD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.590 | Mainly Beta | Sandwich | Jelly Rolls | Alpha-ketoglutarate-dependent dioxygenase AlkB-like | CATH (utative) |
A | 1.20.58.1470 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
E | 2.60.120.590 | Mainly Beta | Sandwich | Jelly Rolls | Alpha-ketoglutarate-dependent dioxygenase AlkB-like | CATH (utative) |
E | 1.20.58.1470 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
C | 2.60.120.590 | Mainly Beta | Sandwich | Jelly Rolls | Alpha-ketoglutarate-dependent dioxygenase AlkB-like | CATH (utative) |
C | 1.20.58.1470 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
G | 2.60.120.590 | Mainly Beta | Sandwich | Jelly Rolls | Alpha-ketoglutarate-dependent dioxygenase AlkB-like | CATH (utative) |
G | 1.20.58.1470 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12934 | FTO C-terminal domain (FTO_CTD) | FTO C-terminal domain | This domain is found at the C-terminus of the FTO protein which was shown to be associated with increased BMI and obesity risk in humans. The N-terminal domain of this protein is a DNA demethylase and this domain is found to associate with the N-ter ... | Domain | |
PF12933 | FTO catalytic domain (FTO_NTD) | FTO catalytic domain | This domain is the catalytic AlkB-like domain from the FTO protein [1]. This domain catalyses a demethylase activity with a preference for 3-methylthymidine. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032868 | Alpha-ketoglutarate-dependent dioxygenase FTO | Family | |
IPR038413 | FTO, C-terminal domain superfamily | Homologous Superfamily | |
IPR024367 | Alpha-ketoglutarate-dependent dioxygenase FTO, catalytic domain | Domain | |
IPR037151 | Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily | Homologous Superfamily | |
IPR024366 | Alpha-ketoglutarate-dependent dioxygenase FTO, C-terminal | Domain |