Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
T [auth 5]SCOP2B SuperfamilyCyclophilin-like8106150 3000168 SCOP2B (2022-06-29)
ESCOP2 FamilyNADH-quinone oxidoreductase NDH subunit 11-like8106045 4005793 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyNADH-quinone oxidoreductase subunit 11-like8106046 3002200 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00146e7eu3A1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: PF00146ECOD (1.6)
JPF00329e7eu3J1 A: a+b two layersX: Nqo5-likeH: Nqo5-like (From Topology)T: Nqo5-likeF: PF00329ECOD (1.6)
P [auth 1]PF01789e7eu311 A: a+b three layersX: Mog1p/PsbP-likeH: Mog1p/PsbP-like (From Topology)T: Mog1p/PsbP-likeF: PF01789ECOD (1.6)
Q [auth 2]PF05757e7eu321 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF05757ECOD (1.6)
R [auth 3]PF05757e7eu331 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF05757ECOD (1.6)
S [auth 4]PF00254e7eu341 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
BPF00361,PF19530e7eu3B1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: PF00361,PF19530ECOD (1.6)
T [auth 5]PF00160e7eu351 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: PF00160ECOD (1.6)
U [auth 6]F_UNCLASSIFIEDe7eu361 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: F_UNCLASSIFIEDECOD (1.6)
V [auth 7]F_UNCLASSIFIEDe7eu371 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: supersandwich (From Topology)T: supersandwichF: F_UNCLASSIFIEDECOD (1.6)
W [auth 8]PF00111e7eu381 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00111ECOD (1.6)
CPF00507e7eu3C1 A: extended segmentsX: NADH-quinone oxidoreductase subunit A (From Topology)H: NADH-quinone oxidoreductase subunit A (From Topology)T: NADH-quinone oxidoreductase subunit AF: PF00507ECOD (1.6)
DPF00361e7eu3D1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: PF00361ECOD (1.6)
EPF00420e7eu3E1 A: alpha complex topologyX: NADH-quinone oxidoreductase subunit K (From Topology)H: NADH-quinone oxidoreductase subunit K (From Topology)T: NADH-quinone oxidoreductase subunit KF: PF00420ECOD (1.6)
FPF00361,PF00662,PF01010e7eu3F1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: PF00361,PF00662,PF01010ECOD (1.6)
GPF00499e7eu3G1 A: extended segmentsX: NADH-quinone oxidoreductase subunit J (From Topology)H: NADH-quinone oxidoreductase subunit J (From Topology)T: NADH-quinone oxidoreductase subunit JF: PF00499ECOD (1.6)
HPF00346e7eu3H1 A: alpha complex topologyX: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)T: alpha-helical domain in nickel-iron hydrogenase, large subunitF: PF00346ECOD (1.6)
HPF00346e7eu3H3 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: PF00346ECOD (1.6)
IPF12838e7eu3I1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF12838ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00146NADH dehydrogenase (NADHdh)NADH dehydrogenase- Family
PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunit- Family
PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunit- Family
PF10716NADH dehydrogenase transmembrane subunit (NdhL)NADH dehydrogenase transmembrane subunit- Family
PF10664Cyanobacterial and plastid NDH-1 subunit M (NdhM)Cyanobacterial and plastid NDH-1 subunit M- Family
P [auth 1]PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
P [auth 1]PF20928PsbP, C-terminal (PsbP_C)PsbP, C-terminalThis entry represents the C-terminal of PsbP/CyanoP and PsbP-like proteins (also known as 23 kDa subunit of oxygen evolving system of photosystem II) from plants and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational ...This entry represents the C-terminal of PsbP/CyanoP and PsbP-like proteins (also known as 23 kDa subunit of oxygen evolving system of photosystem II) from plants and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against two alpha-helices. This entry covers the last three beta-stands (beta8-beta9-beta10) and the C-terminal alpha-helix [1,2].
Domain
Q [auth 2]PF05757Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ)Oxygen evolving enhancer protein 3 (PsbQ)- Family
PF19530NAD(P)H-quinone oxidoreductase subunit 2 N-terminal (Ndh2_N)NAD(P)H-quinone oxidoreductase subunit 2 N-terminalThis domain represents the N-terminal of NAD(P)H-quinone oxidoreductase subunit 2 (or subunit B), part of the P-module (pumping) of the photosynthetic complex I from plants and cyanobacteria, which is structurally and functionally related to the resp ...This domain represents the N-terminal of NAD(P)H-quinone oxidoreductase subunit 2 (or subunit B), part of the P-module (pumping) of the photosynthetic complex I from plants and cyanobacteria, which is structurally and functionally related to the respiratory complex I from mitochondria and bacteria. It is involved in the electron transfer between photosynthetic complex I and photosystem I [1].
Domain
PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
T [auth 5]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
PF00507NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4)NADH-ubiquinone/plastoquinone oxidoreductase, chain 3- Family
PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
PF00420NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2)NADH-ubiquinone/plastoquinone oxidoreductase chain 4L- Family
PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
PF01010NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus (Proton_antipo_C)NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus- Family
PF00662NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N)NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus- Family
PF00499NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3)NADH-ubiquinone/plastoquinone oxidoreductase chain 6- Family
PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
PF132374Fe-4S dicluster domain (Fer4_10)4Fe-4S dicluster domainThis family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
NAD(P)H-quinone oxidoreductase subunit J
NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
NAD(P)H-quinone oxidoreductase subunit L -
NAD(P)H-quinone oxidoreductase subunit M -
NAD(P)H-quinone oxidoreductase subunit N---
O [auth T]Unidentified stromal protein---
P [auth 1]Photosynthetic NDH subunit of subcomplex L1
Q [auth 2]Photosynthetic NDH subunit of subcomplex L2
R [auth 3]Photosynthetic NDH subunit of subcomplex L3---
S [auth 4]Photosynthetic NDH subunit of subcomplex L4---
NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
T [auth 5]Photosynthetic NDH subunit of subcomplex L5 -
U [auth 6]Photosynthetic NDH subunit of subcomplex B1-
V [auth 7]Photosynthetic NDH subunit of subcomplex B2 -
W [auth 8]Photosynthetic NDH subunit of subcomplex B3---
X [auth 9]Photosynthetic NDH subunit of subcomplex B4-
Y [auth 0]Photosynthetic NDH subunit of subcomplex B5-
NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic
NAD(P)H-quinone oxidoreductase subunit F
NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic -
NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
NAD(P)H-quinone oxidoreductase subunit I, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved siteConserved Site
IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
IPR010218NADH dehydrogenase, subunit CFamily
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
IPR019654NAD(P)H-quinone oxidoreductase subunit LFamily
IPR018922NAD(P)H-quinone oxidoreductase subunit MFamily
P [auth 1]IPR002683PsbP, C-terminalDomain
P [auth 1]IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
Q [auth 2]IPR008797Oxygen-evolving enhancer protein 3Family
Q [auth 2]IPR023222PsbQ-like domain superfamilyHomologous Superfamily
IPR010096NAD(P)H-quinone oxidoreductase, subunit N/subunit 2Family
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitDomain
IPR045693NAD(P)H-quinone oxidoreductase subunit 2, N-terminalDomain
T [auth 5]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
T [auth 5]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
T [auth 5]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
U [auth 6]IPR044983Photosynthetic NDH subunit of subcomplex B 1, chloroplasticFamily
V [auth 7]IPR014718Glycoside hydrolase-type carbohydrate-bindingHomologous Superfamily
V [auth 7]IPR011013Galactose mutarotase-like domain superfamilyHomologous Superfamily
X [auth 9]IPR034570Photosynthetic NDH subunit of subcomplex B 4, chloroplasticFamily
Y [auth 0]IPR034569Photosynthetic NDH subunit of subcomplex B 5, chloroplasticFamily
IPR023043NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastidFamily
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3Family
IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyHomologous Superfamily
IPR022997NADH-quinone oxidoreductase chain 4Family
IPR003918NADH:ubiquinone oxidoreductaseFamily
IPR010227NADH-quinone oxidoreductase, chain M/4Family
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitDomain
IPR001133NADH-ubiquinone oxidoreductase chain 4L/KFamily
IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likeFamily
IPR003945NADH-quinone oxidoreductase, chain 5-likeFamily
IPR002128NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminalDomain
IPR001516NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminalDomain
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitDomain
IPR018393NADH-plastoquinone oxidoreductase, chain 5 subgroupFamily
IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJHomologous Superfamily
IPR001457NADH:ubiquinone/plastoquinone oxidoreductase, chain 6Family
IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved siteConserved Site
IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
IPR001135NADH-quinone oxidoreductase, subunit DDomain
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR004497NAD(P)H-quinone oxidoreductase subunit IFamily
IPR010226NADH-quinone oxidoreductase, chain IFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage