7PJU
Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 0] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
L [auth E] | SCOP2 Family | Ribosomal protein L4 | 8105741 | 4003628 | SCOP2 (2022-06-29) |
L [auth E] | SCOP2 Superfamily | Ribosomal protein L4 | 8105742 | 3001146 | SCOP2 (2022-06-29) |
M [auth F] | SCOP2 Family | Ribosomal protein L5 | 8105743 | 4001498 | SCOP2 (2022-06-29) |
M [auth F] | SCOP2 Superfamily | RL5-like | 8105744 | 3001709 | SCOP2 (2022-06-29) |
Q [auth J] | SCOP2 Family | Ribosomal protein L13 | 8105735 | 4003623 | SCOP2 (2022-06-29) |
Q [auth J] | SCOP2 Superfamily | Ribosomal protein L13 | 8105736 | 3001134 | SCOP2 (2022-06-29) |
R [auth K] | SCOP2 Family | Ribosomal protein L14 | 8105753 | 4001826 | SCOP2 (2022-06-29) |
R [auth K] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8105754 | 3000433 | SCOP2 (2022-06-29) |
S [auth L] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8096018 | 3001045 | SCOP2B (2022-06-29) |
B [auth 1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
U [auth N] | SCOP2 Family | Prokaryotic ribosomal protein L17 | 8105737 | 4003526 | SCOP2 (2022-06-29) |
U [auth N] | SCOP2 Superfamily | Prokaryotic ribosomal protein L17 | 8105738 | 3000995 | SCOP2 (2022-06-29) |
Y [auth R] | SCOP2 Family | Ribosomal protein l21p | 8105733 | 4001630 | SCOP2 (2022-06-29) |
Y [auth R] | SCOP2 Superfamily | l21p-like | 8105734 | 3002005 | SCOP2 (2022-06-29) |
Z [auth S] | SCOP2 Family | Ribosomal protein L22 | 8105671 | 4001212 | SCOP2 (2022-06-29) |
Z [auth S] | SCOP2 Superfamily | Ribosomal protein L22 | 8105672 | 3001078 | SCOP2 (2022-06-29) |
AA [auth T] | SCOP2 Family | L23p | 8105747 | 4000943 | SCOP2 (2022-06-29) |
AA [auth T] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8105748 | 3000210 | SCOP2 (2022-06-29) |
BA [auth U] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8105673 | 4001752 | SCOP2 (2022-06-29) |
BA [auth U] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8105674 | 3000334 | SCOP2 (2022-06-29) |
EA [auth X] | SCOP2 Family | Ribosomal protein L28 | 8105607 | 4003961 | SCOP2 (2022-06-29) |
EA [auth X] | SCOP2 Superfamily | L28p-like | 8105608 | 3001966 | SCOP2 (2022-06-29) |
GA [auth Z] | SCOP2 Family | Ribosomal protein L30p/L7e | 8105957 | 4001360 | SCOP2 (2022-06-29) |
GA [auth Z] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8105958 | 3001378 | SCOP2 (2022-06-29) |
KA [auth d] | SCOP2 Family | Ribosomal protein S4 | 8105675 | 4001399 | SCOP2 (2022-06-29) |
KA [auth d] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8105676 | 3001473 | SCOP2 (2022-06-29) |
MA [auth f] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
D [auth 3] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
NA [auth g] | SCOP2 Family | Ribosomal protein S7 | 8105611 | 4001112 | SCOP2 (2022-06-29) |
NA [auth g] | SCOP2 Superfamily | Ribosomal protein S7 | 8105612 | 3000799 | SCOP2 (2022-06-29) |
OA [auth h] | SCOP2B Superfamily | Ribosomal protein S8 | 8095385 | 3000709 | SCOP2B (2022-06-29) |
SA [auth l] | SCOP2 Family | Cold shock DNA-binding domain-like | 8105965 | 4001909 | SCOP2 (2022-06-29) |
SA [auth l] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8105966 | 3000135 | SCOP2 (2022-06-29) |
TA [auth m] | SCOP2 Family | Ribosomal protein S13 | 8105723 | 4000260 | SCOP2 (2022-06-29) |
TA [auth m] | SCOP2 Superfamily | S13-like H2TH domain | 8105724 | 3000053 | SCOP2 (2022-06-29) |
VA [auth o] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8105677 | 4000767 | SCOP2 (2022-06-29) |
VA [auth o] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8105678 | 3001284 | SCOP2 (2022-06-29) |
WA [auth p] | SCOP2 Family | Ribosomal protein S16 | 8105609 | 4001077 | SCOP2 (2022-06-29) |
WA [auth p] | SCOP2 Superfamily | Ribosomal protein S16 | 8105610 | 3000680 | SCOP2 (2022-06-29) |
E [auth 4] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
XA [auth q] | SCOP2 Family | Cold shock DNA-binding domain-like | 8105745 | 4001909 | SCOP2 (2022-06-29) |
XA [auth q] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8105746 | 3000135 | SCOP2 (2022-06-29) |
ZA [auth s] | SCOP2 Family | Ribosomal protein S19 | 8105585 | 4001081 | SCOP2 (2022-06-29) |
ZA [auth s] | SCOP2 Superfamily | Ribosomal protein S19 | 8105586 | 3000686 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 0] | PF01783 | e7pju01 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
J [auth C] | PF00181 | e7pjuC2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
J [auth C] | PF03947 | e7pjuC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
K [auth D] | PF00297 | e7pjuD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
L [auth E] | PF00573 | e7pjuE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
M [auth F] | PF00281,PF00673 | e7pjuF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
N [auth G] | PF00347 | e7pjuG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
O [auth H] | PF01281 | e7pjuH2 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
O [auth H] | PF03948 | e7pjuH1 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: PF03948 | ECOD (1.6) |
P [auth I] | PF00298 | e7pjuI2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
P [auth I] | PF03946 | e7pjuI1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
Q [auth J] | PF00572 | e7pjuJ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
R [auth K] | PF00238 | e7pjuK1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
S [auth L] | PF00828 | e7pjuL1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
B [auth 1] | PF00471 | e7pju11 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
T [auth M] | PF00252 | e7pjuM1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
U [auth N] | PF01196 | e7pjuN1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
V [auth O] | PF00861 | e7pjuO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
W [auth P] | PF01245 | e7pjuP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
X [auth Q] | PF00453 | e7pjuQ1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
Y [auth R] | PF00829 | e7pjuR1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
Z [auth S] | PF00237 | e7pjuS1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
AA [auth T] | PF00276 | e7pjuT1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
BA [auth U] | PF00467,PF17136 | e7pjuU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
CA [auth V] | PF01386 | e7pjuV1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
C [auth 2] | PF00468 | e7pju21 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
DA [auth W] | PF01016 | e7pjuW1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
EA [auth X] | PF00830 | e7pjuX1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
FA [auth Y] | PF00831 | e7pjuY1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
GA [auth Z] | PF00327 | e7pjuZ1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
IA [auth b] | PF00318 | e7pjub1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
JA [auth c] | PF00189 | e7pjuc1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
JA [auth c] | PF07650 | e7pjuc2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
KA [auth d] | PF00163,PF01479 | e7pjud1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
LA [auth e] | PF03719 | e7pjue1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
LA [auth e] | PF00333 | e7pjue2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
MA [auth f] | PF01250 | e7pjuf1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
D [auth 3] | PF01632 | e7pju31 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
NA [auth g] | PF00177 | e7pjug1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
OA [auth h] | PF00410 | e7pjuh2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
OA [auth h] | PF00410 | e7pjuh1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
PA [auth i] | PF00380 | e7pjui1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
QA [auth j] | PF00338 | e7pjuj1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
RA [auth k] | PF00411 | e7pjuk1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
SA [auth l] | PF00164 | e7pjul1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
TA [auth m] | PF00416 | e7pjum1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
UA [auth n] | PF00253 | e7pjun1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
VA [auth o] | PF00312 | e7pjuo1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
WA [auth p] | PF00886 | e7pjup1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
E [auth 4] | PF00444 | e7pju41 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
XA [auth q] | PF00366 | e7pjuq1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
YA [auth r] | PF01084 | e7pjur1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
ZA [auth s] | PF00203 | e7pjus1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
AB [auth t] | PF01649 | e7pjut1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: PF01649 | ECOD (1.6) |
BB [auth u] | PF01165 | e7pjuu1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: PF01165 | ECOD (1.6) |
F [auth 5] | PF00466 | e7pju51 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
G [auth 6] | PF01197 | e7pju61 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: PF01197 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
HA [auth a] | 2MG | Parent Component: G |
HA [auth a] | 4OC | Parent Component: C |
HA [auth a] | 5MC | Parent Component: C |
HA [auth a] | G7M | Parent Component: G |
HA [auth a] | MA6 | Parent Component: A |
HA [auth a] | PSU | Parent Component: U |
HA [auth a] | UR3 | Parent Component: U |
CB [auth v] | 4SU | Parent Component: U |
CB [auth v] | 5MU | Parent Component: U |
CB [auth v] | H2U | Parent Component: U |
CB [auth v] | PSU | Parent Component: U |
DB [auth w] | 4SU | Parent Component: U |
DB [auth w] | 5MU | Parent Component: U |
DB [auth w] | G7M | Parent Component: G |
DB [auth w] | MIA | Parent Component: A |
DB [auth w] | PSU | Parent Component: U |
EB [auth y] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
H [auth A] | 1MG | Parent Component: G :  AA0021 , AA0566 |
H [auth A] | 2MA | Parent Component: A :  AA0021 , AA0566 |
H [auth A] | 2MG | Parent Component: G :  AA0021 , AA0566 |
H [auth A] | 3TD | Parent Component: U :  AA0021 , AA0566 |
H [auth A] | 5MC | Parent Component: C :  AA0021 , AA0566 |
H [auth A] | 5MU | Parent Component: U :  AA0021 , AA0566 |
H [auth A] | 6MZ | Parent Component: A :  AA0021 , AA0566 |
H [auth A] | G7M | Parent Component: G :  AA0021 , AA0566 |
H [auth A] | OMC | Parent Component: C :  AA0021 , AA0566 |
H [auth A] | OMG | Parent Component: G :  AA0021 , AA0566 |
H [auth A] | OMU | Parent Component: U :  AA0021 , AA0566 |
H [auth A] | PSU | Parent Component: U :  AA0021 , AA0566 |