Structure of a ternary KRas(G13D)-SOS complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060856 | 3002022 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060856 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras GEF | 8057967 | 3000128 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ENTH/VHS domain-like | 8057961 | 3000164 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ras | e7kfzA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
C | Ras | e7kfzC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
B | RasGEF | e7kfzB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ras GEF (From Topology) | T: Ras GEF | F: RasGEF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
C | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ... | Domain | |
PF00617 | RasGEF domain (RasGEF) | RasGEF domain | - | Family | |
PF00618 | RasGEF N-terminal motif (RasGEF_N) | RasGEF N-terminal motif | A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this motif/domain N-terminal to the RasGef (Cdc25-like) domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR020849 | Small GTPase, Ras-type | Family | |
IPR001806 | Small GTPase | Family | |
IPR008937 | Ras-like guanine nucleotide exchange factor | Family | |
IPR019804 | Ras guanine-nucleotide exchange factor, conserved site | Conserved Site | |
IPR000219 | Dbl homology domain | Domain | |
IPR036964 | Ras guanine-nucleotide exchange factor, catalytic domain superfamily | Homologous Superfamily | |
IPR035899 | Dbl homology (DH) domain superfamily | Homologous Superfamily | |
IPR023578 | Ras guanine nucleotide exchange factor domain superfamily | Homologous Superfamily | |
IPR055251 | SOS1/NGEF-like, PH domain | Domain | |
IPR001849 | Pleckstrin homology domain | Domain | |
IPR000651 | Ras-like guanine nucleotide exchange factor, N-terminal | Domain | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR001895 | Ras guanine-nucleotide exchange factors catalytic domain | Domain | |
IPR009072 | Histone-fold | Homologous Superfamily |