8F4P

SARS-CoV-2 spike protein trimer (down conformation) bound with a nanobody


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCoronavirus S1 glycoprotein domain C-like8092661 3002615 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCoronavirus spike S2 glycoprotein connector domain-like8092473 3002562 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySARS coronavirus receptor-binding domain-like8092467 3001706 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyConcanavalin A-like lectins/glucanases8092469 3000120 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCoronavirus S2 glycoprotein stalk-like8092471 3000282 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyConcanavalin A-like lectins/glucanases8092469 3000120 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCoronavirus S1 glycoprotein domain C-like8092661 3002615 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCoronavirus spike S2 glycoprotein connector domain-like8092473 3002562 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCoronavirus S1 glycoprotein domain D-like8092663 3002616 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCoronavirus S2 glycoprotein stalk-like8092471 3000282 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySARS coronavirus receptor-binding domain-like8092467 3001706 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCoronavirus S1 glycoprotein domain C-like8092661 3002615 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySARS coronavirus receptor-binding domain-like8092467 3001706 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCoronavirus spike S2 glycoprotein connector domain-like8092473 3002562 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyConcanavalin A-like lectins/glucanases8092469 3000120 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCoronavirus S2 glycoprotein stalk-like8092471 3000282 SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Heavy ChainIGHV3 -spike glycoprotein | spike glycoproteinSAbDab (2024-04-12)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Spike glycoprotein
Anti-S1 Nanobody---