8XO0

Respiratory complex Peripheral Arm of CI, close form B, focus-refined map of type I, PERK -/- mouse under Cold Acclimation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF15879NADH-ubiquinone oxidoreductase MWFE subunit (MWFE)NADH-ubiquinone oxidoreductase MWFE subunit- Family
PF00507NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4)NADH-ubiquinone/plastoquinone oxidoreductase, chain 3- Family
PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunit- Family
PF14987NADH dehydrogenase 1 alpha subcomplex subunit 3 (NADHdh_A3)NADH dehydrogenase 1 alpha subcomplex subunit 3- Family
PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunit- Family
PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
PF01257Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)Thioredoxin-like [2Fe-2S] ferredoxin- Family
PF22461SLBB domain (SLBB_2)SLBB domainThis entry represents a set of SLBB domains [5].Domain
PF01512Nuo51 FMN-binding domain (Complex1_51K)Respiratory-chain NADH dehydrogenase 51 Kd subunit- Family
PF10589NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)NADH-ubiquinone oxidoreductase-F iron-sulfur binding region- Domain
PF00384Molybdopterin oxidoreductase (Molybdopterin)Molybdopterin oxidoreductase- Family
PF22151NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain (NDSU1_4Fe-4S)NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domainThis entry represents the 4Fe-4S domain of NADH-ubiquinone oxidoreductase NDUFS1 from mammals and NuoG from bacteria, which are part of respiratory chain complex I [1-5].Domain
PF135102Fe-2S iron-sulfur cluster binding domain (Fer2_4)2Fe-2S iron-sulfur cluster binding domainThe 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Th ...The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins.
Domain
PF09326NADH-ubiquinone oxidoreductase subunit G, C-terminal (NADH_dhqG_C)NADH-ubiquinone oxidoreductase subunit G, C-terminal- Family
PF22117NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4)NADH-quinone oxidoreductase subunit 3, ferredoxin-like domainNADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ...NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contains Fe4-S4 cluster, one of the redox centers of the complex [1-5].
Domain
PF10588NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3)NADH-ubiquinone oxidoreductase-G iron-sulfur binding region- Domain
PF00146NADH dehydrogenase (NADHdh)NADH dehydrogenase- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
J [auth P]PF05368NmrA-like family (NmrA)NmrA-like family- Family
K [auth Q]PF04800NADH dehydrogenase ubiquinone Fe-S protein 4 (NDUS4)NADH dehydrogenase ubiquinone Fe-S protein 4- Family
K [auth Q]PF05071NADH ubiquinone oxidoreductase subunit NDUFA12 (NDUFA12)NADH ubiquinone oxidoreductase subunit NDUFA12- Family
L [auth R]PF10276Zinc-finger domain (zf-CHCC)Zinc-finger domainThis is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.Domain
L [auth R]PF07347NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) (CI-B14_5a)NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)- Family
M [auth S]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
N [auth T]PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
O [auth V]PF04716ETC complex I subunit conserved region (ETC_C1_NDUFA5)ETC complex I subunit conserved region- Family
P [auth W]PF13233Complex1_LYR-like (Complex1_LYR_2)Complex1_LYR-like- Family
Q [auth X]PF06747CHCH domain (CHCH)CHCH domainwe have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ...we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation [2]. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit [3]. The CHCH domain was previously called DUF657 [4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NADH-ubiquinone oxidoreductase chain 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
NADH-ubiquinone oxidoreductase chain 1
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
J [auth P]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
K [auth Q]NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
L [auth R]NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-
M [auth S]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
N [auth T]Acyl carrier protein, mitochondrial
O [auth V]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-
P [auth W]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-
Q [auth X]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
R [auth Z]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
S [auth a]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1-
T [auth b]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-
U [auth q]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-
V [auth r]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7-
W [auth s]NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3Family
IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyHomologous Superfamily
IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
IPR010218NADH dehydrogenase, subunit CFamily
IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved siteConserved Site
IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
IPR001135NADH-quinone oxidoreductase, subunit DDomain
IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
IPR042128NuoE domainDomain
IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
IPR054765SLBB domainDomain
IPR011537NADH ubiquinone oxidoreductase, F subunitFamily
IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
IPR050837Complex I 51 kDa subunitFamily
IPR006963Molybdopterin oxidoreductase, 4Fe-4S domainDomain
IPR015405NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-likeDomain
IPR006656Molybdopterin oxidoreductaseDomain
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
IPR000283NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved siteConserved Site
IPR054351NADH-ubiquinone oxidoreductase, ferredoxin-like domainDomain
IPR010228NADH:ubiquinone oxidoreductase, subunit GFamily
IPR050123Prokaryotic molybdopterin-containing oxidoreductaseFamily
IPR019574NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur bindingDomain
IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved siteConserved Site
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
IPR010226NADH-quinone oxidoreductase, chain IFamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
J [auth P]IPR008030NmrA-like domainDomain
J [auth P]IPR051207Mitochondrial Complex I NDUFA9 SubunitFamily
J [auth P]IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
K [auth Q]IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4 mitochondrial-likeFamily
K [auth Q]IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyHomologous Superfamily
L [auth R]IPR016668NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialFamily
L [auth R]IPR019401Zinc finger, CHCC-typeDomain
M [auth S]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
M [auth S]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
M [auth S]IPR016464NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2Family
N [auth T]IPR006162Phosphopantetheine attachment sitePTM
N [auth T]IPR009081Phosphopantetheine binding ACP domainDomain
N [auth T]IPR036736ACP-like superfamilyHomologous Superfamily
N [auth T]IPR003231Acyl carrier proteinFamily
O [auth V]IPR006806NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5Family
P [auth W]IPR016488NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6Family
P [auth W]IPR045299NDUFA6, LYR domainDomain
Q [auth X]IPR010625CHCHDomain
Q [auth X]IPR016680NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8Family
R [auth Z]IPR009346GRIM-19Family
S [auth a]IPR017384NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1Family
T [auth b]IPR026626NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3Family
U [auth q]IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12Family
V [auth r]IPR009947NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7Family
W [auth s]IPR026193NADH-ubiquinone oxidoreductase flavoprotein 3Family