1N92

Horse Liver Alcohol Dehydrogenase Complexed with NAD+ and 4-Iodopyrazole


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HLDPDB ENTRY 1HLD

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Dialysis7277MPD, pH 7.0, Dialysis, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.1742.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.2α = 78.96
b = 51.05β = 75.47
c = 93.23γ = 70.24
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVconfocal osmic2001-03-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.472088.80.0540.0545.92.1156075109109
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.471.508690.1270.1274.15097

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HLD1.4720156075109109223488.80.15150.1510.1510.1831RANDOM17.152
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.020.78-0.210.040.06
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free9.496
r_sphericity_bonded7.943
r_dihedral_angle_1_deg6.051
r_scangle_it5.258
r_angle_other_deg3.608
r_scbond_it3.604
r_mcangle_it2.276
r_angle_refined_deg1.634
r_mcbond_it1.513
r_rigid_bond_restr1.376
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free9.496
r_sphericity_bonded7.943
r_dihedral_angle_1_deg6.051
r_scangle_it5.258
r_angle_other_deg3.608
r_scbond_it3.604
r_mcangle_it2.276
r_angle_refined_deg1.634
r_mcbond_it1.513
r_rigid_bond_restr1.376
r_symmetry_vdw_other0.308
r_nbd_other0.288
r_nbd_refined0.233
r_symmetry_vdw_refined0.217
r_symmetry_hbond_refined0.112
r_chiral_restr0.106
r_nbtor_other0.106
r_xyhbond_nbd_refined0.094
r_bond_refined_d0.016
r_gen_planes_other0.008
r_gen_planes_refined0.006
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5570
Nucleic Acid Atoms
Solvent Atoms589
Heterogen Atoms104

Software

Software
Software NamePurpose
d*TREKdata scaling
d*TREKdata reduction
AMoREphasing
REFMACrefinement