X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.4277.16Mes-Bistris, LiCl, DTT, Mega8, PKI, ATP, MgCl, , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 277.16K, pH 6.40
Crystal Properties
Matthews coefficientSolvent content
2.5952.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.286α = 90
b = 75.387β = 90
c = 80.377γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray280AREA DETECTORBRUKER0.3 MM COLLIMATOR2002-02-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU300

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.68.050.097117412

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.68.0510534120785.80.2020.1960.25RANDOM19.01
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.799
r_scangle_it1.819
r_angle_refined_deg1.216
r_scbond_it1.036
r_mcangle_it0.794
r_angle_other_deg0.782
r_mcbond_it0.418
r_symmetry_vdw_refined0.219
r_nbd_other0.214
r_symmetry_vdw_other0.207
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.799
r_scangle_it1.819
r_angle_refined_deg1.216
r_scbond_it1.036
r_mcangle_it0.794
r_angle_other_deg0.782
r_mcbond_it0.418
r_symmetry_vdw_refined0.219
r_nbd_other0.214
r_symmetry_vdw_other0.207
r_nbd_refined0.189
r_symmetry_hbond_refined0.154
r_xyhbond_nbd_refined0.143
r_nbtor_other0.087
r_chiral_restr0.069
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2941
Nucleic Acid Atoms
Solvent Atoms132
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
SAINTdata reduction
SAINTdata scaling