SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.5 mM CsrA; U-15N; 50mM phosphate buffer; 150 mM NaCl; 100% D2O | 100% D2O | 150 mM NaCl | 5.2 | ambient | 300 | |
2 | 3D_15N-separated_NOESY | 0.5 mM CsrA; U-15N; 50mM phosphate buffer; 150 mM NaCl; 95% H2O, 5% D2O | 95% H2O/5% D2O | 150 mM NaCl | 5.2 | ambient | 300 | |
3 | 2D NOESY | 0.5 mM CsrA; U-15N; 50mM phosphate buffer; 150 mM NaCl; 95% H2O, 5% D2O | 95% H2O/5% D2O | 150 mM NaCl | 5.2 | ambient | 300 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 700 |
3 | Bruker | DRX | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
Automatic peak assignment by ARIA; simulated annealing in CNS; | 200 structures are calculated in each iteration; 30 structures with lowest restraint energy refined after iteration 8. Refinement carried out by inclusion of implicit water solvent. | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 14 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | In general, all NMR experiments were performed essentially as described in Cavanagh, et al. (1996), especially for 3D experiments required for sequential backbone assignments |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | Bruker |
2 | processing | NMRPipe | Delaglio et al. | |
3 | data analysis | NMRView | 5.0 | Johnson, B |
4 | structure solution | ARIA | 1.2 | Linge, J/ Nilges, M |
5 | structure solution | CNS | 1.1 | Brunger |
6 | refinement | CNS | 1.1 | Brunger |