2E76

Crystal Structure of the Cytochrome b6f Complex with tridecyl-stigmatellin (TDS) from M.laminosus


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
6.01710779.558281

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 157.227α = 90
b = 157.227β = 90
c = 363.295γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-11-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97856APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.441.399.80.1177.137057-397.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.4141.2735129185299.680.188220.184730.25563RANDOM62.768
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.020.511.02-1.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.162
r_dihedral_angle_3_deg27.18
r_dihedral_angle_4_deg25.672
r_scangle_it21.711
r_scbond_it16.754
r_dihedral_angle_1_deg12.51
r_mcangle_it10.05
r_mcbond_it6.938
r_angle_refined_deg4.042
r_nbd_refined0.397
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.162
r_dihedral_angle_3_deg27.18
r_dihedral_angle_4_deg25.672
r_scangle_it21.711
r_scbond_it16.754
r_dihedral_angle_1_deg12.51
r_mcangle_it10.05
r_mcbond_it6.938
r_angle_refined_deg4.042
r_nbd_refined0.397
r_nbtor_refined0.386
r_symmetry_hbond_refined0.37
r_symmetry_vdw_refined0.33
r_xyhbond_nbd_refined0.249
r_chiral_restr0.242
r_metal_ion_refined0.235
r_bond_refined_d0.037
r_gen_planes_refined0.012
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7467
Nucleic Acid Atoms
Solvent Atoms5
Heterogen Atoms640

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing