Solution NMR Structure of Protein Ne2328 from Nitrosomonas europaea. Northeast Structural Genomics Consortium Target NeT3.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | GFT (4,3)D HNNCABCA | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
2 | GFT (4,3)D CABCA(CO)NHN | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
3 | GFT (4,3)D HABCAB(CO)NHN | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
4 | GFT (4,3)D HCCH | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
5 | Simultaneous 13C-, 15N-resolved [1H, 1H] NOESY | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
6 | Aromatic 13C-resolved [1H, 1H] NOESY | 10 mM MOPS, 450 mM NaCl, 10 mM DTT, ~10 uM Zn++, 0.01 % NaN3, 1 mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 750 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics, explicit water bath refinement | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | B-FACTOR COLUMN STORES ADDITIONAL COORDINATE DIGITS. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.3 | Delaglio |
2 | collection | VNMR | 6.1C | Varian Inc. |
3 | data analysis | CARA | 1.5 | Keller |
4 | structure solution | CYANA | 2.1 | Guentert |
5 | refinement | CNS | 1.1 |