NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural Genomics Consortium target SOR39
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | [4,3]D GFT, HNNCABCA | MC2023, 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 2 | [4,3]D GFT, CABCA(CO)NHN | MC2023, 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 3 | [4,3]D GFT ALI-HCCH | MC2023, 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 4 | [4,3]D GFT ARO-HCCH | MC2023, 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 5 | [4,3]D GFT, HABCAB(CO)NHN | MC2023, 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 6 | SIMULTANIOUS HETERONUCLEAR RESOLVED [1H, 1H]-NOESY | MC2023, 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics | The structures are based on a total of restraints, 1828 are NOE-derived distance constraints, 126 dihedral angle restraints, 35 distance restraints from hydrogen bonds. | NMRPipe |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using triple-resonance NMR spectroscopy. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 2.5 | Frank Delaglio, et al |
| 2 | data analysis | DYANA | 1.5 | Peter Guntert., et al |
| 3 | data analysis | AutoStructure | 2.0.0 | Huang, Y. J., et al |
| 4 | refinement | CYANA | 2.1 | Peter Guntert., et al |
| 5 | refinement | CNS | 1.1 | A.T.Brunger., et al |
| 6 | data analysis | XEASY | 1.3.11 | Bartels, C., et al |
