Solution structure of protein SRU_2040 from Salinibacter ruber (strain DSM 13855) . Northeast Structural Genomics Consortium target SrR106
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
2 | 3D HNCO | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
4 | 3D HNCACB | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
5 | (4,3)D HABCAB(CO)NH | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
6 | 3D HCCH-TOCSY | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
7 | (4,3)D HCCH | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
8 | (N15-H1, C13-H1) simNOESY | 0.7 mM [U-100% 13C; U-100% 15N] protein-1 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 298 | |
9 | 2D 1H-13C HSQC | 1.0 mM [U-5% 13C; U-99% 15N] protein-2 | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | AutoAssign |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
2 | structure solution | AutoStructure | Huang, Tejero, Powers and Montelione | |
3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
4 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | peak picking | XEASY | Bartels et al. | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |