2MPT
WW3 domain of Nedd4L in complex with its HECT domain PY motif
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.7 mM WW3-1, 1.4 mM HECT_PY-2, 150 mM sodium chloride-3, 20 mM sodium phosphate-4 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
2 | 2D 1H-1H TOCSY | 0.7 mM WW3-1, 1.4 mM HECT_PY-2, 150 mM sodium chloride-3, 20 mM sodium phosphate-4 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
3 | 3D 1H-15N NOESY | 1 mM [U-100% 15N] WW3-5, 2 mM HECT_PY-6, 150 mM sodium chloride-7, 20 mM sodium phosphate-8 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
4 | 3D 1H-15N TOCSY | 1 mM [U-100% 15N] WW3-5, 2 mM HECT_PY-6, 150 mM sodium chloride-7, 20 mM sodium phosphate-8 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
5 | 3D HNCACB | 0.8 mM [U-100% 13C; U-100% 15N] WW3-9, 1.6 mM HECT_PY-10, 150 mM sodium chloride-11, 20 mM sodium phosphate-12 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
6 | 3D CBCA(CO)NH | 0.8 mM [U-100% 13C; U-100% 15N] WW3-9, 1.6 mM HECT_PY-10, 150 mM sodium chloride-11, 20 mM sodium phosphate-12 | 90% H2O/10% D2O | 7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing | CNSSOLVE |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure solution | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | chemical shift assignment | CARA | Keller and Wuthrich | |
4 | peak picking | CARA | Keller and Wuthrich | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | collection | TopSpin | Bruker Biospin | |
7 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax |