3C4W

Crystal Structure of G protein coupled receptor kinase 1 bound to ATP and magnesium chloride at 2.7A


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2ACXPDB ENTRY 2ACX

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.35277PEG 3350, NaCl, glycerol, sodium tartarate, pH 4.35, ATP, magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.7455.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 202.889α = 90
b = 55.054β = 100.82
c = 122.699γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-08-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97967APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7506.837248
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.7

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 2ACX2.719.983693099.770.192410.1924123.599
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.120.42-0.150.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.904
r_dihedral_angle_4_deg17.091
r_dihedral_angle_3_deg16.505
r_dihedral_angle_1_deg5.434
r_scangle_it4.079
r_scbond_it3.034
r_mcangle_it1.549
r_angle_refined_deg1.331
r_mcbond_it1.186
r_angle_other_deg0.893
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.904
r_dihedral_angle_4_deg17.091
r_dihedral_angle_3_deg16.505
r_dihedral_angle_1_deg5.434
r_scangle_it4.079
r_scbond_it3.034
r_mcangle_it1.549
r_angle_refined_deg1.331
r_mcbond_it1.186
r_angle_other_deg0.893
r_nbd_refined0.216
r_symmetry_vdw_other0.192
r_symmetry_hbond_refined0.19
r_nbtor_refined0.186
r_nbd_other0.185
r_symmetry_vdw_refined0.165
r_xyhbond_nbd_refined0.151
r_mcbond_other0.13
r_metal_ion_refined0.097
r_nbtor_other0.087
r_chiral_restr0.072
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8108
Nucleic Acid Atoms
Solvent Atoms166
Heterogen Atoms68

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling