3JSZ

Legionella pneumophila glucosyltransferase Lgt1 N293A with UDP-Glc


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15293.1523% PEG3350, 0.06M ammonium acetat, 0.1M sodium acetate buffer, pH5.0, temperature 293.15K
Crystal Properties
Matthews coefficientSolvent content
2.4649.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.232α = 90
b = 122.232β = 90
c = 102.779γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayPIXELPSI PILATUS 6M2009-06-07MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.00, 0.97973, 0.97957, 0.97205SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.72299.90.0627.36.96291522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.81000.3911.96.660773

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.721.965972331921000.167010.16560.19318RANDOM17.846
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.62-0.31-0.620.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.547
r_dihedral_angle_4_deg22.311
r_dihedral_angle_3_deg13.058
r_dihedral_angle_1_deg5.397
r_scangle_it3.244
r_scbond_it2.061
r_mcangle_it1.209
r_angle_refined_deg1.182
r_angle_other_deg0.831
r_mcbond_it0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.547
r_dihedral_angle_4_deg22.311
r_dihedral_angle_3_deg13.058
r_dihedral_angle_1_deg5.397
r_scangle_it3.244
r_scbond_it2.061
r_mcangle_it1.209
r_angle_refined_deg1.182
r_angle_other_deg0.831
r_mcbond_it0.62
r_mcbond_other0.125
r_chiral_restr0.065
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4135
Nucleic Acid Atoms
Solvent Atoms712
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement