X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52930.1 M Hepes, pH 7.5, 0.2 M MgCl2, 15% PEG 3350, 1% CHAPSO, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2244.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.831α = 90
b = 109.182β = 111.91
c = 73.721γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210rmirrors2009-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.9792APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15098.90.1170.11716.746162661626-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1487.80.5710.5711.82.82718

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.134.575764557645308198.760.182550.179970.23181RANDOM14.302
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.08-0.820.4-0.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.936
r_dihedral_angle_3_deg15.368
r_dihedral_angle_4_deg15.346
r_dihedral_angle_1_deg6.028
r_scangle_it3.823
r_scbond_it2.562
r_angle_refined_deg1.516
r_mcangle_it1.354
r_angle_other_deg0.917
r_mcbond_it0.715
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.936
r_dihedral_angle_3_deg15.368
r_dihedral_angle_4_deg15.346
r_dihedral_angle_1_deg6.028
r_scangle_it3.823
r_scbond_it2.562
r_angle_refined_deg1.516
r_mcangle_it1.354
r_angle_other_deg0.917
r_mcbond_it0.715
r_chiral_restr0.193
r_mcbond_other0.168
r_bond_refined_d0.014
r_bond_other_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8143
Nucleic Acid Atoms
Solvent Atoms455
Heterogen Atoms232

Software

Software
Software NamePurpose
HKL-3000data collection
HKL-3000phasing
SHELXDphasing
SHELXEmodel building
MLPHAREphasing
DMmodel building
SOLVEphasing
RESOLVEmodel building
ARP/wARPmodel building
REFMACrefinement
Cootmodel building
HKL-2000data reduction
HKL-2000data scaling
DMphasing
RESOLVEphasing