3L3X

Crystal structure of DHT-bound androgen receptor in complex with the first motif of steroid receptor coactivator 3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5293PEG 3350, pH 7.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2946.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.314α = 90
b = 66.704β = 90
c = 73.137γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2006-06-24SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.00APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.555092.20.053413693812422
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.551.61920.4282.23.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.55504090137974292798.880.181390.179470.20568RANDOM24.052
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.32-0.9-1.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.852
r_dihedral_angle_3_deg12.548
r_dihedral_angle_4_deg10.547
r_sphericity_free9.433
r_scangle_it4.989
r_dihedral_angle_1_deg3.886
r_sphericity_bonded3.556
r_scbond_it3.295
r_mcangle_it2.466
r_rigid_bond_restr1.635
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.852
r_dihedral_angle_3_deg12.548
r_dihedral_angle_4_deg10.547
r_sphericity_free9.433
r_scangle_it4.989
r_dihedral_angle_1_deg3.886
r_sphericity_bonded3.556
r_scbond_it3.295
r_mcangle_it2.466
r_rigid_bond_restr1.635
r_mcbond_it1.407
r_angle_refined_deg1.253
r_angle_other_deg0.888
r_mcbond_other0.421
r_chiral_restr0.083
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2137
Nucleic Acid Atoms
Solvent Atoms211
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
DENZOdata reduction
SCALEPACKdata scaling