5AMX

Crystal Structure of Proteinase K processed with the CrystalDirect automated mounting and cryo-cooling technology


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
10.1 M HEPES, PH=7.5, 1.3 M AMMONIUM SULFATE, 0.1 M NACL
Crystal Properties
Matthews coefficientSolvent content
2.0439.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.975α = 90
b = 67.975β = 90
c = 102.057γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.013089.60.056.71135382

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTNONE1.0129.13107731567690.520.157510.157070.16565RANDOM8.249
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.923
r_dihedral_angle_4_deg17.562
r_dihedral_angle_3_deg11.154
r_dihedral_angle_1_deg6.24
r_scbond_it2.398
r_angle_refined_deg1.973
r_mcangle_it1.207
r_angle_other_deg1.086
r_mcbond_it0.878
r_mcbond_other0.806
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.923
r_dihedral_angle_4_deg17.562
r_dihedral_angle_3_deg11.154
r_dihedral_angle_1_deg6.24
r_scbond_it2.398
r_angle_refined_deg1.973
r_mcangle_it1.207
r_angle_other_deg1.086
r_mcbond_it0.878
r_mcbond_other0.806
r_chiral_restr0.139
r_bond_refined_d0.026
r_gen_planes_refined0.012
r_bond_other_d0.007
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2030
Nucleic Acid Atoms
Solvent Atoms359
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement