1MDV | pdb_00001mdv


HEM: PROTOPORPHYRIN IX CONTAINING FE

HEM is a Ligand Of Interest in 1MDV designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1MDV_HEM_A_113Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1MDV_HEM_A_113Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1MDV_HEM_A_113Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1MDV_HEM_A_113 78% 26% 0.129 0.9711.62 1.41 8 610100%1
1MDV_HEM_B_113 75% 18% 0.13 0.9631.77 1.78 8 800100%1
1MDV_HEM_A_112 74% 27% 0.126 0.9551.73 1.21 7 510100%1
1MDV_HEM_A_111 72% 32% 0.118 0.9421.54 1.16 5 300100%1
1MDV_HEM_B_110 70% 27% 0.143 0.9621.62 1.32 9 720100%1
1MDV_HEM_B_111 66% 26% 0.136 0.9421.56 1.42 6 900100%1
1MDV_HEM_B_112 62% 31% 0.14 0.9311.54 1.23 6 500100%1
1MDV_HEM_A_110 61% 34% 0.151 0.9411.49 1.11 4 300100%1
2CTH_HEM_B_109 100% 26% 0.05 0.9911.5 1.5 8 700100%1
1FHF_HEM_A_350 100% 17% 0.021 0.9971.8 1.82 12 340100%1
1HBH_HEM_A_144 100% 11% 0.019 0.9971.48 2.62 5 1250100%1
2D2C_HEM_A_301 100% 9% 0.024 0.9992.2 2.28 9 1240100%1
3EJD_HEM_B_405 100% 17% 0.018 0.9981.9 1.69 6 820100%1
3EJE_HEM_B_405 100% 18% 0.022 0.9971.91 1.6 8 870100%1