PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 2DGM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2DGM_PLP_E_502 | 75% | 38% | 0.125 | 0.957 | 0.93 | 1.48 | - | 6 | 1 | 0 | 100% | 1 |
| 2DGM_PLP_B_500 | 73% | 41% | 0.126 | 0.953 | 0.85 | 1.44 | - | 4 | 1 | 0 | 100% | 1 |
| 2DGM_PLP_C_501 | 73% | 38% | 0.125 | 0.951 | 0.9 | 1.51 | 1 | 6 | 1 | 0 | 100% | 1 |
| 2DGM_PLP_F_502 | 71% | 40% | 0.13 | 0.95 | 0.84 | 1.46 | - | 5 | 1 | 0 | 100% | 1 |
| 2DGM_PLP_A_500 | 69% | 39% | 0.13 | 0.945 | 0.92 | 1.47 | - | 6 | 2 | 0 | 100% | 1 |
| 2DGM_PLP_D_501 | 57% | 38% | 0.163 | 0.939 | 0.92 | 1.48 | - | 6 | 1 | 0 | 100% | 1 |
| 1XEY_PLP_A_500 | 98% | 20% | 0.062 | 0.988 | 1.71 | 1.7 | 3 | 5 | 2 | 0 | 100% | 1 |
| 1PMM_PLP_B_500 | 96% | 41% | 0.059 | 0.968 | 0.77 | 1.5 | - | 6 | 1 | 0 | 100% | 1 |
| 2DGK_PLP_A_1500 | 77% | 41% | 0.132 | 0.973 | 1.07 | 1.23 | 1 | 3 | 1 | 0 | 100% | 1 |
| 2DGL_PLP_B_500 | 76% | 39% | 0.145 | 0.983 | 1.02 | 1.34 | - | 5 | 0 | 0 | 100% | 1 |
| 2BIE_PLP_A_1361 | 100% | 38% | 0.024 | 0.996 | 1.23 | 1.19 | 1 | 3 | 1 | 0 | 100% | 1 |
| 2X3L_PLP_A_1211 | 100% | 19% | 0.024 | 0.995 | 1.74 | 1.73 | 2 | 2 | 1 | 0 | 100% | 1 |
| 3CEJ_PLP_A_832 | 100% | 41% | 0.021 | 0.998 | 1.23 | 1.05 | 1 | 2 | 8 | 0 | 100% | 1 |
| 3CEM_PLP_A_832 | 100% | 41% | 0.021 | 0.997 | 1.24 | 1.04 | 2 | 2 | 1 | 0 | 100% | 1 |
| 4PPM_PLP_A_902 | 100% | 7% | 0.019 | 0.998 | 2.88 | 1.91 | 9 | 6 | 0 | 0 | 100% | 1 |
