GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 2HDN designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2HDN_GDP_L_6999Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2HDN_GDP_L_6999Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2HDN_GDP_L_6999Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2HDN_GDP_L_6999 83% 35% 0.12 0.9781.07 1.46 2 700100%1
2HDN_GDP_J_5999 83% 35% 0.126 0.9841.22 1.34 4 500100%1
2HDN_GDP_H_4999 76% 36% 0.137 0.9731.12 1.38 2 610100%1
2HDN_GDP_F_3999 71% 38% 0.139 0.9610.99 1.41 2 710100%1
2HDN_GDP_B_1999 69% 37% 0.151 0.9651.15 1.33 4 710100%1
2HDN_GDP_D_2999 68% 36% 0.162 0.9741.11 1.42 2 710100%1
2HCJ_GDP_A_999 88% 53% 0.106 0.9820.94 0.88 2 300100%1
5I4R_GDP_G_101 38% 58% 0.194 0.8950.74 0.87 - 100100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
9BAJ_GDP_A_203 100% 41% 0.032 0.9941.22 1.1 2 210100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1