Ligand validation:2VPY

MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE

MGD is a Ligand Of Interest in 2VPY designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2VPY_MGD_A_1766	56%	6%	0.185	0.957	2.06	2.86	12	12	3	0	100%	1
2VPY_MGD_E_1765	47%	9%	0.223	0.964	1.84	2.65	9	15	5	0	100%	1
2VPY_MGD_A_1765	47%	8%	0.211	0.951	1.92	2.72	10	11	4	0	100%	1
2VPY_MGD_E_1766	44%	8%	0.227	0.955	2.16	2.47	12	12	7	0	100%	1
2VPZ_MGD_A_1766	77%	7%	0.126	0.966	1.87	2.91	12	12	3	0	100%	1
2VPX_MGD_A_1765	69%	4%	0.114	0.929	2.84	2.74	18	11	7	0	100%	1
2VPW_MGD_A_1766	60%	4%	0.181	0.969	2.71	2.81	16	12	5	0	100%	1
1G8K_MGD_E_5201	100%	27%	0.03	0.991	1.49	1.47	7	4	2	0	100%	1
3O5A_MGD_A_1804	100%	23%	0.049	0.99	1.22	1.96	3	14	2	0	100%	1
8BQH_MGD_A_1101	99%	44%	0.051	0.99	0.98	1.17	2	3	0	0	100%	1
2E7Z_MGD_A_801	99%	28%	0.056	0.99	1.32	1.57	2	8	1	0	100%	1
8RJA_MGD_B_504	99%	31%	0.048	0.979	1.26	1.48	4	8	2	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.