Ligand validation:2DGM

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 2DGM designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2DGM_PLP_E_502	75%	38%	0.125	0.957	0.93	1.48	-	6	1	0	100%	0.9375
2DGM_PLP_B_500	73%	41%	0.126	0.953	0.85	1.44	-	4	1	0	100%	0.9375
2DGM_PLP_C_501	73%	38%	0.125	0.951	0.9	1.51	1	6	1	0	100%	0.9375
2DGM_PLP_F_502	71%	40%	0.13	0.95	0.84	1.46	-	5	1	0	100%	0.9375
2DGM_PLP_A_500	69%	39%	0.13	0.945	0.92	1.47	-	6	2	0	100%	0.9375
2DGM_PLP_D_501	57%	38%	0.163	0.939	0.92	1.48	-	6	1	0	100%	0.9375
1XEY_PLP_A_500	98%	20%	0.062	0.988	1.71	1.7	3	5	2	0	100%	0.9375
1PMM_PLP_B_500	93%	41%	0.077	0.971	0.77	1.49	-	6	1	0	100%	0.9375
2DGK_PLP_A_1500	77%	41%	0.132	0.973	1.07	1.23	1	3	1	0	100%	0.9375
2DGL_PLP_B_500	76%	39%	0.145	0.983	1.02	1.34	-	5	0	0	100%	0.9375
2BIE_PLP_B_1361	100%	28%	0.039	0.989	1.48	1.39	4	3	1	0	100%	0.9375
9J0V_PLP_A_301	100%	36%	0.037	0.987	0.82	1.68	-	5	0	0	100%	0.9375
4NOG_PLP_A_501	100%	38%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	21%	0.045	0.993	1.96	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	15%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.