DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
DGD is a Ligand Of Interest in 5L8R designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5L8R_DGD_J_1106 | 37% | 49% | 0.197 | 0.918 | 0.92 | 1.06 | 4 | 5 | 3 | 0 | 88% | 0.8788 |
5L8R_DGD_4_319 | 32% | 43% | 0.186 | 0.899 | 0.73 | 1.44 | 2 | 9 | 5 | 0 | 77% | 0.7727 |
5L8R_DGD_B_854 | 25% | 49% | 0.233 | 0.884 | 0.97 | 1 | 5 | 3 | 9 | 0 | 92% | 0.9242 |
5L8R_DGD_G_207 | 1% | 57% | 0.381 | 0.63 | 0.59 | 1.07 | 1 | 3 | 1 | 0 | 71% | 0.7121 |
5L8R_DGD_B_801 | 0% | 54% | 0.24 | 0.348 | 0.61 | 1.16 | - | 6 | 3 | 0 | 62% | 0.6212 |
6ZXS_DGD_2_327 | 22% | 48% | 0.199 | 0.854 | 0.92 | 1.09 | 3 | 5 | 5 | 0 | 77% | 0.7727 |
4Y28_DGD_B_7101 | 22% | 42% | 0.242 | 0.87 | 0.91 | 1.33 | 1 | 11 | 4 | 0 | 92% | 0.9242 |
4RKU_DGD_B_7101 | 18% | 42% | 0.266 | 0.867 | 0.88 | 1.37 | 1 | 11 | 4 | 0 | 92% | 0.9242 |
7DKZ_DGD_B_850 | 16% | 33% | 0.252 | 0.825 | 1.13 | 1.5 | 6 | 10 | 6 | 0 | 100% | 1 |
5V2C_DGD_C_516 | 95% | 43% | 0.067 | 0.983 | 0.89 | 1.29 | 5 | 10 | 0 | 0 | 94% | 0.9394 |
7YQ7_DGD_C_518 | 87% | 51% | 0.084 | 0.967 | 0.83 | 1.07 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
8IR5_DGD_C_515 | 86% | 47% | 0.092 | 0.97 | 0.81 | 1.21 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
8IRC_DGD_C_517 | 85% | 47% | 0.096 | 0.973 | 0.83 | 1.2 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5ZZN_DGD_c_517 | 85% | 45% | 0.09 | 0.966 | 1.05 | 1.06 | 3 | 5 | 0 | 0 | 94% | 0.9394 |