5NH8
XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 5NH8 designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5NH8_XYP_A_504 | 37% | 61% | 0.19 | 0.887 | 0.56 | 0.93 | - | - | 0 | 0 | 100% | 1 |
5NH8_XYP_D_504 | 37% | 59% | 0.172 | 0.867 | 0.51 | 1.06 | - | 1 | 0 | 0 | 100% | 1 |
5NH8_XYP_B_505 | 30% | 54% | 0.193 | 0.855 | 0.49 | 1.26 | - | 1 | 0 | 0 | 100% | 1 |
5NH8_XYP_A_506 | 14% | 70% | 0.221 | 0.776 | 0.51 | 0.66 | - | - | 1 | 0 | 100% | 1 |
5NH8_XYP_C_504 | 13% | 40% | 0.215 | 0.755 | 0.66 | 1.66 | - | 2 | 0 | 0 | 100% | 1 |
5NH8_XYP_B_501 | 11% | 56% | 0.23 | 0.752 | 0.68 | 0.99 | - | 1 | 0 | 0 | 100% | 1 |
5NH8_XYP_A_505 | 9% | 64% | 0.276 | 0.76 | 0.5 | 0.87 | - | - | 0 | 0 | 100% | 1 |
5NH8_XYP_D_505 | 2% | 56% | 0.3 | 0.555 | 0.63 | 1.06 | - | 1 | 0 | 0 | 100% | 1 |
5NH7_XYP_A_504 | 45% | 53% | 0.174 | 0.905 | 0.68 | 1.14 | - | 1 | 0 | 0 | 100% | 1 |
5NH9_XYP_A_504 | 41% | 54% | 0.161 | 0.877 | 0.68 | 1.07 | - | - | 0 | 0 | 100% | 1 |
5NHE_XYP_A_504 | 34% | 55% | 0.196 | 0.88 | 0.42 | 1.3 | - | 2 | 0 | 0 | 100% | 1 |
5NHD_XYP_A_504 | 27% | 54% | 0.216 | 0.861 | 0.58 | 1.18 | - | 1 | 0 | 0 | 100% | 1 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |
1V0L_XYP_A_1305 | 98% | 72% | 0.055 | 0.992 | 0.52 | 0.57 | - | - | 0 | 0 | 90% | 0.9 |
1FHD_XYP_A_601 | 96% | 72% | 0.042 | 0.97 | 0.68 | 0.41 | - | - | 0 | 0 | 90% | 0.9 |