Education Corner: Creating 3D Protein Models and Videos

05/20 

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In the Spring 2024 Newsletter, learn about Building and Animating Catalase in a High School Classroom . AP Biology students at John H. Pitman High School were tasked with creating animations depicting an active site in catalase and the mechanistic breakdown of two hydrogen peroxide molecules. These animations were created using pipe cleaners, clay, toothpicks, and stop-motion cinematography. The data used to generate these animations were from RCSB Protein Data Bank resources, AlphaFold DB, and various scientific publications. This project represents a Science Technology Engineering Art and Math (STEAM) and Project Based Learning (PBL) approach to a common enzyme lab. Below is an anecdote depicting what the project was and meant to one of the students in the class.

Training Opportunities; a Python Package to Access the Search API; a new Cancer Molecular Animation; and more.

Published quarterly, each Education Corner describes of how community members use the PDB and related resources.
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News Index

• 05/01 Register Now for a Webinar on Understanding PDB Validation: Which experimental structures should I rely on?

• 04/30 Annual Report Published

• 04/30 wwPDB News: Coming soon: Annotation of Protein Modifications in the PDB

• 04/23 April 24 to 30 is World Immunization Week

• 04/21 Celebrate DNA Day on April 25

• 04/18 April 22 is Earth Day

• 04/16 Spring Newsletter Published

• 04/14 Paper Published: Folding paper models of biostructures for outreach and education

• 04/09 Register Now for a Webinar on Understanding PDB Validation: Which experimental structures should I rely on?

• 04/08 wwPDB News: CASP16 Call for Targets

• 04/02 Video: Immunology and Cancer

• 04/01 Register Now for a Virtual Deep Dive into Computed Structure Model Exploration at RCSB.org

• 04/01 Paper Published on NMR Restraint Validation

• 03/31 Explore Mechanism and Catalytic Site Annotations

• 03/29 Take the EDMAPS.rcsb.org Survey

• 03/26 Education Corner: Bringing Proteins to Life

• 03/24 Register for the April 1 Mol* Virtual Office Hour

• 03/21 March 24 is World TB Day

• 03/20 Meet RCSB PDB at the #DiscoverBMB Meeting

• 03/17 Paper Published: Visualizing groups of PDB structures and CSMs

• 03/12 wwPDB News: Paper Published on CryoEM Archiving and Validation Recommendations

• 03/11 March 11-17: Brain Awareness Week

• 03/06 wwPDB News: Poster Prize Awarded at The Biophysical Society Meeting

• 02/29 March 4 is International HPV Awareness Day

• 02/27 February 29 is Rare Disease Day

• 02/27 wwPDB News: Latest Developments on the EMDB Published

• 02/25 Register for the March 28 Office Hour to Ask A Biocurator

• 02/23 wwPDB Preprint Published on NMR Restraint Validation

• 02/20 wwPDB Preprint Published on CryoEM Archiving and Validation Recommendations

• 02/16 PDB-101 Focus: Peak Performance

• 02/14 wwPDB Preprint Published on NextGen Archive

• 02/12 Use a Python Package to Access the RCSB PDB Search API

• 02/11 Molecular Valentines

• 02/06 Meet RCSB PDB at The Biophysical Society Meeting

• 02/01 February 4 is World Cancer Day

• 01/30 Register for VIZBI 2024 (March 13–15)

• 01/30 Notice: NGL Viewer Deprecation

• 01/24 Take the CSM User Survey and Win

• 01/19 Register for the February 13 Mol* Webinar

• 01/18 Undergrads: Spend your summer with RCSB PDB

• 01/16 Register for the February 5 RCSB.org Office Hour

• 01/15 Switch from MMTF to BCIF

• 01/10 Celebrate #NationalMilkDay

• 01/08 wwPDB News: Resources for Supporting the Extended PDB ID Format (pdb_00001abc)

• 01/08 Winter Newsletter Published

• 01/07 Applications Open for Director

• 01/04 Top Molecules of the Month in 2023

• 01/03 wwPDB News: Time-stamped Copies of PDB and EMDB Archives